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TitleMechanisms of substrate recognition and N6-methyladenosine demethylation revealed by crystal structures of ALKBH5-RNA complexes.
Journal, issue, pagesNucleic Acids Res., Vol. 50, Page 4148-4160, Year 2022
Publish dateAug 13, 2021 (structure data deposition date)
AuthorsKaur, S. / Tam, N.Y. / McDonough, M.A. / Schofield, C.J. / Aik, W.S.
External linksNucleic Acids Res. / PubMed:35333330
MethodsX-ray diffraction
Resolution2.1 - 2.5 Å
Structure data

PDB-7v4g:
Crystal structure of human ALKBH5 in complex with m6A-containing ssRNA
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-7wkv:
Crystal structure of human ALKBH5 in complex with 2-oxoglutarate (2OG) and m6A-containing ssRNA
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-7wl0:
Crystal structure of human ALKBH5 in complex with N-oxalylglycine (NOG) and m6A-containing ssRNA
Method: X-RAY DIFFRACTION / Resolution: 2.5 Å

Chemicals

ChemComp-GOL:
GLYCEROL

ChemComp-MN:
Unknown entry

ChemComp-SO4:
SULFATE ION

ChemComp-HOH:
WATER

ChemComp-AKG:
2-OXOGLUTARIC ACID

ChemComp-OGA:
N-OXALYLGLYCINE / inhibitor*YM

ChemComp-FMT:
FORMIC ACID

Source
  • homo sapiens (human)
  • synthetic construct (others)
KeywordsOXIDOREDUCTASE/RNA / Iron and 2-oxoglutarate dependent oxygenase / RNA demethylase / double-stranded beta helix / OXIDOREDUCTASE-RNA COMPLEX / oxidoreductase

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