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Structure paper

TitleMetabolism of a hybrid algal galactan by members of the human gut microbiome.
Journal, issue, pagesNat. Chem. Biol., Vol. 18, Page 501-510, Year 2022
Publish dateJan 21, 2021 (structure data deposition date)
AuthorsRobb, C.S. / Hobbs, J.K. / Pluvinage, B. / Reintjes, G. / Klassen, L. / Monteith, S. / Giljan, G. / Amundsen, C. / Vickers, C. / Hettle, A.G. ...Robb, C.S. / Hobbs, J.K. / Pluvinage, B. / Reintjes, G. / Klassen, L. / Monteith, S. / Giljan, G. / Amundsen, C. / Vickers, C. / Hettle, A.G. / Hills, R. / Xing, X. / Montina, T. / Zandberg, W.F. / Abbott, D.W. / Boraston, A.B.
External linksNat. Chem. Biol. / PubMed:35289327
MethodsX-ray diffraction
Resolution1.9 - 2.85 Å
Structure data

PDB-7lh6:
The structure of Bacteroides plebeius L-galactose dehydrogenase
Method: X-RAY DIFFRACTION / Resolution: 2.85 Å

PDB-7lha:
Structure of the Exo-L-galactose-6-sulfatase BuS1_11 from Bacteroides uniformis
Method: X-RAY DIFFRACTION / Resolution: 1.95 Å

PDB-7lj2:
Structure of Exo-L-galactose-6-sulfatase BuS1_11 from Bacteroides uniformis in complex with neoporphyrabiose
Method: X-RAY DIFFRACTION / Resolution: 2.4 Å

PDB-7ljj:
Structure of the Exo-alpha-L-galactosidase BpGH29 from Bacteroides plebeius
Method: X-RAY DIFFRACTION / Resolution: 1.9 Å

PDB-7lk7:
Structure of the Exo-alpha-L-galactosidase BpGH29 from Bacteroides plebeius in complex with L-galactose
Method: X-RAY DIFFRACTION / Resolution: 2.19 Å

PDB-7lnp:
Structure of the exo-alpha-L-galactosidase BpGH29 (D264N mutant) from Bacteroides plebeius in complex with paranitrophenyl-alpha-L-galactopyranoside
Method: X-RAY DIFFRACTION / Resolution: 2.7 Å

Chemicals

ChemComp-HOH:
WATER

ChemComp-CA:
Unknown entry

ChemComp-NI:
NICKEL (II) ION

ChemComp-NA:
Unknown entry

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-GXL:
alpha-L-galactopyranose

ChemComp-Y9Y:
paranitrophenyl-alpha-L-galactopyranoside

ChemComp-CL:
Unknown entry

Source
  • bacteroides plebeius (bacteria)
  • bacteroides uniformis (bacteria)
KeywordsOXIDOREDUCTASE / dehydrogenase / L-galactose / carbohydrate / HYDROLASE / sulfatase / porphyran / glycoside hydrolase

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