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TitleStructural basis of microRNA processing by Dicer-like 1.
Journal, issue, pagesNat Plants, Vol. 7, Issue 10, Page 1389-1396, Year 2021
Publish dateSep 30, 2021
AuthorsXiaobin Wei / Huanhuan Ke / Aijia Wen / Bo Gao / Jing Shi / Yu Feng /
PubMed AbstractMicroRNAs (miRNAs) are short non-coding RNAs that inhibit the expression of target genes by directly binding to their mRNAs. In animals, pri-miRNAs are cleaved by Drosha to generate pre-miRNAs, which ...MicroRNAs (miRNAs) are short non-coding RNAs that inhibit the expression of target genes by directly binding to their mRNAs. In animals, pri-miRNAs are cleaved by Drosha to generate pre-miRNAs, which are subsequently cleaved by Dicer to generate mature miRNAs. Instead of being cleaved by two different enzymes, both cleavages in plants are performed by Dicer-like 1 (DCL1). With a similar domain architecture as human Dicer, it is mysterious how DCL1 recognizes pri-miRNAs and performs two cleavages sequentially. Here, we report the single-particle cryo-electron microscopy structures of Arabidopsis DCL1 complexed with a pri-miRNA and a pre-miRNA, respectively, in cleavage-competent states. These structures uncover the plasticity of the PAZ domain, which is critical for the recognition of both pri-miRNA and pre-miRNA. These structures suggest that the helicase module serves as an engine that transfers the substrate between two sequential cleavage events. This study lays a foundation for dissecting the regulation mechanism of miRNA biogenesis in plants and provides insights into the dicing state of human Dicer.
External linksNat Plants / PubMed:34593993
MethodsEM (single particle)
Resolution4.6 - 4.9 Å
Structure data

EMDB-31181, PDB-7eld:
Cryo-EM structure of Arabidopsis DCL1 in complex with pri-miRNA 166f
Method: EM (single particle) / Resolution: 4.6 Å

EMDB-31182, PDB-7ele:
Cryo-EM structure of Arabidopsis DCL1 in complex with pre-miRNA 166f
Method: EM (single particle) / Resolution: 4.9 Å

Source
  • arabidopsis thaliana (thale cress)
KeywordsHYDROLASE / MicroRNA / miRNA / Endonuclease / Helicase / Nuclease / RNA-binding

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