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Structure paper

TitleStructural basis for tRNA methylthiolation by the radical SAM enzyme MiaB.
Journal, issue, pagesNature, Vol. 597, Page 566-570, Year 2021
Publish dateApr 20, 2021 (structure data deposition date)
AuthorsEsakova, O.A. / Grove, T.L. / Yennawar, N.H. / Arcinas, A.J. / Wang, B. / Krebs, C. / Almo, S.C. / Booker, S.J.
External linksNature / PubMed:34526715
MethodsX-ray diffraction
Resolution1.4 - 2.24 Å
Structure data

PDB-7mjv:
MiaB in the complex with s-adenosylmethionine and RNA
Method: X-RAY DIFFRACTION / Resolution: 2.24 Å

PDB-7mjw:
Methylated MiaB in the complex with 5'-deoxyadenosine, methionine and RNA
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-7mjx:
MiaB in the complex with 5'-deoxyadenosine, methionine and RNA
Method: X-RAY DIFFRACTION / Resolution: 1.5 Å

PDB-7mjy:
MiaB in the complex with s-adenosyl-L-homocysteine and RNA
Method: X-RAY DIFFRACTION / Resolution: 1.86 Å

PDB-7mjz:
The structure of MiaB with pentasulfide bridge
Method: X-RAY DIFFRACTION / Resolution: 2.08 Å

Chemicals

ChemComp-F3S:
FE3-S4 CLUSTER

ChemComp-SF4:
IRON/SULFUR CLUSTER

ChemComp-SAM:
S-ADENOSYLMETHIONINE

ChemComp-MG:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-ZKP:
FE3-S4 methylated cluster

ChemComp-MET:
METHIONINE

ChemComp-5AD:
5'-DEOXYADENOSINE

ChemComp-NA:
Unknown entry

ChemComp-TRS:
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL / pH buffer*YM

ChemComp-PGE:
TRIETHYLENE GLYCOL

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER

ChemComp-SAH:
S-ADENOSYL-L-HOMOCYSTEINE

ChemComp-CL:
Unknown entry

ChemComp-PS5:
PENTASULFIDE-SULFUR

Source
  • bacteroides uniformis (bacteria)
KeywordsTRANSFERASE/RNA / tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase / TRANSFERASE / TRANSFERASE-RNA complex

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