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Structure paper

TitleThe Oxoglutarate Binding Site and Regulatory Mechanism Are Conserved in Ammonium Transporter Inhibitors GlnKs from Methanococcales .
Journal, issue, pagesInt J Mol Sci, Vol. 22, Year 2021
Publish dateJul 13, 2021 (structure data deposition date)
AuthorsMuller, M.C. / Wagner, T.
External linksInt J Mol Sci / PubMed:34445335
MethodsX-ray diffraction
Resolution1.16 - 2.3 Å
Structure data

PDB-7p4v:
GlnK1 from Methanothermococcus thermolithotrophicus with dADP at a resolution of 1.94 A
Method: X-RAY DIFFRACTION / Resolution: 1.94 Å

PDB-7p4y:
GlnK2 from Methanothermococcus thermolithotrophicus in the apo state at a resolution of 2.3 A
Method: X-RAY DIFFRACTION / Resolution: 2.3 Å

PDB-7p50:
GlnK2 from Methanothermococcus thermolithotrophicus in complex with Mg-ATP and 2-oxoglutarate at a resolution of 1.16 A
Method: X-RAY DIFFRACTION / Resolution: 1.16 Å

PDB-7p52:
GlnK1 from Methanocaldococcus jannaschii with Mg-ATP and 2-oxoglutarate at a resolution of 1.2 A
Method: X-RAY DIFFRACTION / Resolution: 1.20002 Å

Chemicals

ChemComp-DAT:
2'-DEOXYADENOSINE-5'-DIPHOSPHATE

ChemComp-CL:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-AKG:
2-OXOGLUTARIC ACID

ChemComp-MG:
Unknown entry

ChemComp-ATP:
ADENOSINE-5'-TRIPHOSPHATE / ATP, energy-carrying molecule*YM

ChemComp-MES:
2-(N-MORPHOLINO)-ETHANESULFONIC ACID / pH buffer*YM

ChemComp-GOL:
GLYCEROL

ChemComp-NO3:
NITRATE ION

Source
  • methanothermococcus thermolithotrophicus dsm 2095 (archaea)
  • methanocaldococcus jannaschii dsm 2661 (archaea)
KeywordsSIGNALING PROTEIN / PII-family / Methanococcales / methanogenic archaea / hydrogenotrophs / protein regulation / inhibitor / T-loop / conformational change / dADP / 2-oxoglutarate / nitrogen metabolism / PII-family protein / protein inhibitor / regulation / thermophile / ATP binding / conformational changes / nitrogen-metabolism / hydrogenotrophic / ATP / hyperthermophile

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