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TitleTranscriptional processing of an unnatural base pair by eukaryotic RNA polymerase II.
Journal, issue, pagesNat. Chem. Biol., Vol. 17, Page 906-914, Year 2021
Publish dateOct 10, 2020 (structure data deposition date)
AuthorsOh, J. / Shin, J. / Unarta, I.C. / Wang, W. / Feldman, A.W. / Karadeema, R.J. / Xu, L. / Xu, J. / Chong, J. / Krishnamurthy, R. ...Oh, J. / Shin, J. / Unarta, I.C. / Wang, W. / Feldman, A.W. / Karadeema, R.J. / Xu, L. / Xu, J. / Chong, J. / Krishnamurthy, R. / Huang, X. / Romesberg, F.E. / Wang, D.
External linksNat. Chem. Biol. / PubMed:34140682
MethodsX-ray diffraction
Resolution3.45 - 3.89 Å
Structure data

PDB-7ked:
RNA polymerase II elongation complex with unnatural base dTPT3
Method: X-RAY DIFFRACTION / Resolution: 3.6 Å

PDB-7kee:
RNA polymerase II elongation complex with unnatural base dTPT3, rNaMTP bound to E-site
Method: X-RAY DIFFRACTION / Resolution: 3.45 Å

PDB-7kef:
RNA polymerase II elongation complex with unnatural base dTPT3, rNaM in swing state
Method: X-RAY DIFFRACTION / Resolution: 3.89 Å

Chemicals

ChemComp-ZN:
Unknown entry

ChemComp-MG:
Unknown entry

ChemComp-WCG:
(1S)-1,4-anhydro-5-O-[(R)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-1-(3-methoxynaphthalen-2-yl)-D-ribitol

ChemComp-WC4:
(1S)-1,4-anhydro-1-(3-methoxynaphthalen-2-yl)-5-O-phosphono-D-ribitol

Source
  • saccharomyces cerevisiae (strain atcc 204508 / s288c) (yeast)
  • synthetic construct (others)
KeywordsTRANSCRIPTION/DNA/RNA / RNA polymerase II / elongation complex / unnatural base / TPT3 / NAM / TRANSCRIPTION / TRANSCRIPTION-DNA-RNA complex / swing state

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