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Structure paper

TitleHow cyanophage S-2L rejects adenine and incorporates 2-aminoadenine to saturate hydrogen bonding in its DNA.
Journal, issue, pagesNat Commun, Vol. 12, Page 2420-2420, Year 2021
Publish dateJul 8, 2020 (structure data deposition date)
AuthorsCzernecki, D. / Legrand, P. / Tekpinar, M. / Rosario, S. / Kaminski, P.A. / Delarue, M.
External linksNat Commun / PubMed:33893297
MethodsX-ray diffraction
Resolution0.860002552904 - 1.72097384171 Å
Structure data

PDB-6zp9:
Cyanophage S-2L Primase-Polymerase (PrimPol), AEP domain (PP-N190)
Method: X-RAY DIFFRACTION / Resolution: 1.50002224932 Å

PDB-6zpa:
Cyanophage S-2L HD phosphohydrolase (DatZ) bound to dA and one catalytic Zn2+ ion
Method: X-RAY DIFFRACTION / Resolution: 0.860002552904 Å

PDB-6zpb:
Cyanophage S-2L HD phosphohydrolase (DatZ) bound to dA and two catalytic Co2+ ions
Method: X-RAY DIFFRACTION / Resolution: 1.72097384171 Å

PDB-6zpc:
Cyanophage S-2L HD phosphohydrolase (DatZ) bound to dATP
Method: X-RAY DIFFRACTION / Resolution: 1.26835935206 Å

Chemicals

ChemComp-CA:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-3D1:
(2R,3S,5R)-5-(6-amino-9H-purin-9-yl)-tetrahydro-2-(hydroxymethyl)furan-3-ol

ChemComp-ZN:
Unknown entry

ChemComp-LI:
Unknown entry

ChemComp-CO:
Unknown entry

ChemComp-DTP:
2'-DEOXYADENOSINE 5'-TRIPHOSPHATE

Source
  • cyanophage s-2l (virus)
KeywordsVIRAL PROTEIN / S-2L / AEP / PrimPol / ppl1 / HD phosphohydrolase / DatZ

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