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Structure paper

TitleActivation mechanism of a small prototypic Rec-GGDEF diguanylate cyclase.
Journal, issue, pagesNat Commun, Vol. 12, Page 2162-2162, Year 2021
Publish dateJul 29, 2020 (structure data deposition date)
AuthorsTeixeira, R.D. / Holzschuh, F. / Schirmer, T.
External linksNat Commun / PubMed:33846343
MethodsX-ray diffraction
Resolution2.2 - 3.3 Å
Structure data

PDB-6zxb:
Diguanylate cyclase DgcR (I-site mutant) in native state
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

PDB-6zxc:
Diguanylate cyclase DgcR (I-site mutant) in activated state
Method: X-RAY DIFFRACTION / Resolution: 2.8 Å

PDB-6zxm:
Diguanylate cyclase DgcR in complex with c-di-GMP
Method: X-RAY DIFFRACTION / Resolution: 3.3 Å

Chemicals

ChemComp-GH3:
3'-DEOXY-GUANOSINE-5'-TRIPHOSPHATE

ChemComp-MG:
Unknown entry

ChemComp-SO4:
SULFATE ION

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-HOH:
WATER

ChemComp-C2E:
9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)

Source
  • leptospira biflexa serovar patoc strain 'patoc 1 (paris)' (bacteria)
  • leptospira biflexa serovar patoc (strain patoc 1 / atcc 23582 / paris) (bacteria)
KeywordsSIGNALING PROTEIN / GGDEF domain / receiver domain / Rec / c-di-GMP / Leptospira / Beryllium Fluoride

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