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Structure paper

TitleTargeting the ALS/FTD-associated A-DNA kink with anthracene-based metal complex causes DNA backbone straightening and groove contraction.
Journal, issue, pagesNucleic Acids Res., Vol. 49, Page 9526-9538, Year 2021
Publish dateOct 31, 2019 (structure data deposition date)
AuthorsJhan, C.R. / Satange, R. / Wang, S.C. / Zeng, J.Y. / Horng, Y.C. / Jin, P. / Neidle, S. / Hou, M.H.
External linksNucleic Acids Res. / PubMed:33836081
MethodsX-ray diffraction
Resolution1.578 - 2.94 Å
Structure data

PDB-6l75:
Crystal structure of d(GTGGGCCGAC)2 DNA duplex
Method: X-RAY DIFFRACTION / Resolution: 1.578 Å

PDB-6l76:
Crystal structure of the Ni(II)(Chro)2-d(TTGGGCCGAA/TTCGGCCCAA) complex at 2.94 angstrom resolution
Method: X-RAY DIFFRACTION / Resolution: 2.94 Å

PDB-7bpv:
r(GUGGGCCGAC)/d(GTCGGCCCAC) hybrid duplex structure
Method: X-RAY DIFFRACTION / Resolution: 1.781 Å

Chemicals

ChemComp-HOH:
WATER

ChemComp-CPH:
(1S)-5-deoxy-1-O-methyl-1-C-[(2R,3S)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-D-xylulose

ChemComp-NI:
NICKEL (II) ION

ChemComp-SO4:
SULFATE ION

Source
  • synthetic construct (others)
KeywordsDNA / A form DNA / GGGGCC motif / GC rich duplex / G4C2 / Duplex DNA / nucleotide flipping-out / Hoogsteen base pair / DNA-RNA HYBRID / G4C2 repeat / GGCC motif / A-like DNA structure

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