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TitleSynergy and allostery in ligand binding by HIV-1 Nef.
Journal, issue, pagesBiochem. J., Vol. 478, Page 1525-1545, Year 2021
Publish dateApr 9, 2009 (structure data deposition date)
AuthorsAldehaiman, A. / Momin, A.A. / Restouin, A. / Wang, L. / Shi, X. / Aljedani, S. / Opi, S. / Lugari, A. / Shahul Hameed, U.F. / Ponchon, L. ...Aldehaiman, A. / Momin, A.A. / Restouin, A. / Wang, L. / Shi, X. / Aljedani, S. / Opi, S. / Lugari, A. / Shahul Hameed, U.F. / Ponchon, L. / Morelli, X. / Huang, M. / Dumas, C. / Collette, Y. / Arold, S.T.
External linksBiochem. J. / PubMed:33787846
MethodsX-ray diffraction
Resolution1.343 - 3.32 Å
Structure data

PDB-3h0f:
Crystal structure of the human Fyn SH3 R96W mutant
Method: X-RAY DIFFRACTION / Resolution: 2.61 Å

PDB-3h0h:
human Fyn SH3 domain R96I mutant, crystal form I
Method: X-RAY DIFFRACTION / Resolution: 1.76 Å

PDB-3h0i:
human Fyn SH3 domain R96I mutant, crystal form II
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

PDB-4d8d:
Crystal structure of HIV-1 NEF Fyn-SH3 R96W variant
Method: X-RAY DIFFRACTION / Resolution: 2.5201 Å

PDB-6ipy:
His-tagged Fyn SH3 domain R96I mutant
Method: X-RAY DIFFRACTION / Resolution: 1.343 Å

PDB-6ipz:
Fyn SH3 domain R96W mutant, crystallized with 18-crown-6
Method: X-RAY DIFFRACTION / Resolution: 1.576 Å

PDB-7d7s:
HIV-1 SF2 Nef in complex with the Fyn SH3 R96I mutant
Method: X-RAY DIFFRACTION / Resolution: 3.32 Å

Chemicals

ChemComp-PG5:
1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE

ChemComp-HOH:
WATER

ChemComp-PG4:
TETRAETHYLENE GLYCOL / precipitant*YM

ChemComp-GOL:
GLYCEROL

ChemComp-O4B:
1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE

Source
  • homo sapiens (human)
  • human immunodeficiency virus type 1
  • human immunodeficiency virus type 1 group m subtype b (isolate arv2/sf2)
KeywordsTRANSFERASE / beta barrel / TRANSFERASE/PROTEIN BINDING / signaling molecules / TRANSFERASE-PROTEIN BINDING complex / PROTEIN BINDING / kinase / SH3 domain / hexa-histidine tag / crystal stabilized by histidine tag / 18-crown-6 / crown ether / VIRAL PROTEIN / Complex / mutant / SH3

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