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TitleInsights into the dual cleavage activity of the GH16 laminarinase enzyme class on beta-1,3 and beta-1,4 glycosidic bonds.
Journal, issue, pagesJ. Biol. Chem., Vol. 296, Page 100385-100385, Year 2021
Publish dateJul 7, 2020 (structure data deposition date)
AuthorsLiberato, M.V. / Teixeira Prates, E. / Goncalves, T.A. / Bernardes, A. / Vilela, N. / Fattori, J. / Ematsu, G.C. / Chinaglia, M. / Machi Gomes, E.R. / Migliorini Figueira, A.C. ...Liberato, M.V. / Teixeira Prates, E. / Goncalves, T.A. / Bernardes, A. / Vilela, N. / Fattori, J. / Ematsu, G.C. / Chinaglia, M. / Machi Gomes, E.R. / Migliorini Figueira, A.C. / Damasio, A. / Polikarpov, I. / Skaf, M.S. / Squina, F.M.
External linksJ. Biol. Chem. / PubMed:33556371
MethodsX-ray diffraction
Resolution1.5 - 2.15 Å
Structure data

PDB-6xof:
Crystal structure of SCLam, a non-specific endo-beta-1,3(4)-glucanase from family GH16
Method: X-RAY DIFFRACTION / Resolution: 1.5 Å

PDB-6xqf:
Crystal structure of SCLam E144S mutant, a non-specific endo-beta-1,3(4)-glucanase from family GH16, co-crystallized with 1,3-beta-D-cellotriosyl-glucose, presenting a 1,3-beta-D-cellobiosyl-glucose at active site
Method: X-RAY DIFFRACTION / Resolution: 1.58 Å

PDB-6xqg:
Crystal structure of SCLam E144S mutant, a non-specific endo-beta-1,3(4)-glucanase from family GH16, co-crystallized with 1,3-beta-D-cellobiosyl-cellobiose, presenting a 1,3-beta-D-cellobiosyl-glucose at active site
Method: X-RAY DIFFRACTION / Resolution: 2.15 Å

PDB-6xqh:
Crystal structure of SCLam E144S mutant, a non-specific endo-beta-1,3(4)-glucanase from family GH16, co-crystallized with cellotriose, presenting a 1,3-beta-D-cellobiosyl-glucose and a cellobiose at active site
Method: X-RAY DIFFRACTION / Resolution: 1.57 Å

PDB-6xql:
Crystal structure of SCLam E144S mutant, a non-specific endo-beta-1,3(4)-glucanase from family GH16, co-crystallized with cellohexaose, presenting a 1,3-beta-D-cellobiosyl-glucose at active site
Method: X-RAY DIFFRACTION / Resolution: 1.97 Å

PDB-6xqm:
Crystal structure of SCLam E144S mutant, a non-specific endo-beta-1,3(4)-glucanase from family GH16, co-crystallized with laminarihexaose, presenting a laminaribiose and a glucose at active site
Method: X-RAY DIFFRACTION / Resolution: 1.85 Å

Chemicals

ChemComp-CA:
Unknown entry

ChemComp-GOL:
GLYCEROL

ChemComp-HOH:
WATER

ChemComp-PO4:
PHOSPHATE ION

ChemComp-GLC:
alpha-D-glucopyranose

Source
  • uncultured bacterium (environmental samples)
KeywordsHYDROLASE / metagenomics / beta-glucan / endo-1 / 3(4)-beta-glucanases / glycoside hydrolase / transglycosylation / metagenome

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