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Structure paper

TitleCrystal structures of the EVE-HNH endonuclease VcaM4I in the presence and absence of DNA.
Journal, issue, pagesNucleic Acids Res., Vol. 49, Page 1708-1723, Year 2021
Publish dateMar 25, 2020 (structure data deposition date)
AuthorsPastor, M. / Czapinska, H. / Helbrecht, I. / Krakowska, K. / Lutz, T. / Xu, S.Y. / Bochtler, M.
External linksNucleic Acids Res. / PubMed:33450012
MethodsX-ray diffraction
Resolution1.48 - 3.14 Å
Structure data

PDB-6yex:
VcaM4I restriction endonuclease in the absence of DNA
Method: X-RAY DIFFRACTION / Resolution: 1.5 Å

PDB-6yjb:
VcaM4I restriction endonuclease 5hmC-ssDNA complex
Method: X-RAY DIFFRACTION / Resolution: 1.55 Å

PDB-6ykf:
VcaM4I restriction endonuclease in the presence of 5mC-modified ssDNA
Method: X-RAY DIFFRACTION / Resolution: 1.48 Å

PDB-6ymg:
VcaM4I restriction endonuclease in complex with 5mC-modified dsDNA
Method: X-RAY DIFFRACTION / Resolution: 3.14 Å

Chemicals

ChemComp-SO4:
SULFATE ION

ChemComp-CL:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-GOL:
GLYCEROL

Source
  • vibrio campbellii (bacteria)
  • synthetic construct (others)
KeywordsHYDROLASE / PUA superfamily / EVE domain / DNA endonuclease / modification-dependent restriction endonuclease / MDRE / single stranded DNA / 5-methylcytosineE / 5-hydroxymethylcytosine / 5-methylcytosine

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