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Structure paper

TitleFluorogenic aptamers resolve the flexibility of RNA junctions using orientation-dependent FRET.
Journal, issue, pagesRna, Vol. 27, Page 433-444, Year 2021
Publish dateOct 16, 2019 (structure data deposition date)
AuthorsJeng, S.C.Y. / Trachman III, R.J. / Weissenboeck, F. / Truong, L. / Link, K.A. / Jepsen, M.D.E. / Knutson, J.R. / Andersen, E.S. / Ferre-D'Amare, A.R. / Unrau, P.J.
External linksRna / PubMed:33376189
MethodsX-ray diffraction
Resolution2.1 - 2.8 Å
Structure data

PDB-6up0:
Structure of the Mango-III fluorescent aptamer bound to YO3-Biotin
Method: X-RAY DIFFRACTION / Resolution: 2.8 Å

PDB-7l0z:
Spinach variant bound to DFHBI-1T
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

Chemicals

ChemComp-MG:
Unknown entry

ChemComp-YO3:
YO3-biotin

ChemComp-K:
Unknown entry

ChemComp-2ZY:
(5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2-methyl-3-(2,2,2-trifluoroethyl)-3,5-dihydro-4H-imidazol-4-one

ChemComp-SPM:
SPERMINE

ChemComp-PO4:
PHOSPHATE ION

ChemComp-NA:
Unknown entry

ChemComp-HOH:
WATER

Source
  • synthetic construct (others)
KeywordsRNA / fluorescent / aptamer

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