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Structure paper

TitleStructural insights into the mechanism of rhodopsin phosphodiesterase.
Journal, issue, pagesNat Commun, Vol. 11, Page 5605-5605, Year 2020
Publish dateJul 9, 2020 (structure data deposition date)
AuthorsIkuta, T. / Shihoya, W. / Sugiura, M. / Yoshida, K. / Watari, M. / Tokano, T. / Yamashita, K. / Katayama, K. / Tsunoda, S.P. / Uchihashi, T. ...Ikuta, T. / Shihoya, W. / Sugiura, M. / Yoshida, K. / Watari, M. / Tokano, T. / Yamashita, K. / Katayama, K. / Tsunoda, S.P. / Uchihashi, T. / Kandori, H. / Nureki, O.
External linksNat Commun / PubMed:33154353
MethodsX-ray diffraction
Resolution2.1 - 3.5 Å
Structure data

PDB-7cj3:
Crystal structure of the transmembrane domain of Salpingoeca rosetta rhodopsin phosphodiesterase
Method: X-RAY DIFFRACTION / Resolution: 2.6 Å

PDB-7d7p:
Crystal structure of the phosphodiesterase domain of Salpingoeca rosetta rhodopsin phosphodiesterase
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-7d7q:
Crystal structure of the transmembrane domain and linker region of Salpingoeca rosetta rhodopsin phosphodiesterase
Method: X-RAY DIFFRACTION / Resolution: 3.5 Å

Chemicals

ChemComp-RET:
RETINAL

ChemComp-OLC:
(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate

ChemComp-HOH:
WATER

ChemComp-2PE:
NONAETHYLENE GLYCOL / precipitant*YM

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-ZN:
Unknown entry

ChemComp-MG:
Unknown entry

Source
  • salpingoeca rosetta (strain atcc 50818 / bsb-021) (eukaryote)
KeywordsMEMBRANE PROTEIN / microbial rhodopsin / eight-transmembrane / light-dependent phosphodiesterase

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