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TitleStructural and Cellular Insights into the l,d-Transpeptidase YcbB as a Therapeutic Target in Citrobacter rodentium, Salmonella Typhimurium, and Salmonella Typhi Infections.
Journal, issue, pagesAntimicrob. Agents Chemother., Vol. 65, Year 2021
Publish dateOct 17, 2020 (structure data deposition date)
AuthorsCaveney, N.A. / Serapio-Palacios, A. / Woodward, S.E. / Bozorgmehr, T. / Caballero, G. / Vuckovic, M. / Deng, W. / Finlay, B.B. / Strynadka, N.C.J.
External linksAntimicrob. Agents Chemother. / PubMed:33139287
MethodsX-ray diffraction
Resolution2.6 - 3.6 Å
Structure data

PDB-7kgm:
C. rodentium YcbB - ertapenem complex
Method: X-RAY DIFFRACTION / Resolution: 2.6 Å

PDB-7kgn:
S. Typhi YcbB - ertapenem complex
Method: X-RAY DIFFRACTION / Resolution: 3.6 Å

Chemicals

ChemComp-1RG:
(4R,5S)-3-({(3S,5S)-5-[(3-carboxyphenyl)carbamoyl]pyrrolidin-3-yl}sulfanyl)-5-[(1S,2R)-1-formyl-2-hydroxypropyl]-4-methyl-4,5-dihydro-1H-pyrrole-2-carboxylic acid / medication, antibiotic*YM

ChemComp-HOH:
WATER

Source
  • citrobacter rodentium (strain icc168) (bacteria)
  • salmonella enterica (bacteria)
KeywordsTRANSFERASE / L / D-transpeptidase / antibiotic

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