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Structure paper

TitleStructural basis of mammalian mucin processing by the human gut O-glycopeptidase OgpA from Akkermansia muciniphila.
Journal, issue, pagesNat Commun, Vol. 11, Page 4844-4844, Year 2020
Publish dateMay 15, 2020 (structure data deposition date)
AuthorsTrastoy, B. / Naegeli, A. / Anso, I. / Sjogren, J. / Guerin, M.E.
External linksNat Commun / PubMed:32973204
MethodsX-ray diffraction
Resolution1.649 - 2.347 Å
Structure data

PDB-6z2d:
Crystal structure of wild type OgpA from Akkermansia muciniphila in P 41 21 2
Method: X-RAY DIFFRACTION / Resolution: 1.899 Å

PDB-6z2o:
Crystal structure of wild type OgpA from Akkermansia muciniphila in P 21 21 21
Method: X-RAY DIFFRACTION / Resolution: 1.649 Å

PDB-6z2p:
Crystal structure of catalytic inactive OgpA from Akkermansia muciniphila in complex with an O-glycopeptide (glycodrosocin) substrate
Method: X-RAY DIFFRACTION / Resolution: 2.16 Å

PDB-6z2q:
Crystal structure of wild type OgpA from Akkermansia muciniphila in complex with an O-glycopeptide (GalGalNAc-TS) product
Method: X-RAY DIFFRACTION / Resolution: 2.347 Å

Chemicals

ChemComp-PG4:
TETRAETHYLENE GLYCOL / precipitant*YM

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-FMT:
FORMIC ACID

ChemComp-ZN:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-CA:
Unknown entry

ChemComp-ACY:
ACETIC ACID

Source
  • akkermansia muciniphila atcc baa-835 (bacteria)
  • synthetic construct (others)
KeywordsHYDROLASE / O-glycan endopeptidase / mucins / OgpA. metalloprotease

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