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TitleSerial Femtosecond Zero Dose Crystallography Captures a Water-Free Distal Heme Site in a Dye-Decolorising Peroxidase to Reveal a Catalytic Role for an Arginine in Fe IV =O Formation.
Journal, issue, pagesAngew. Chem. Int. Ed. Engl., Vol. 59, Page 21656-21662, Year 2020
Publish dateApr 19, 2020 (structure data deposition date)
AuthorsLucic, M. / Svistunenko, D.A. / Wilson, M.T. / Chaplin, A.K. / Davy, B. / Ebrahim, A. / Axford, D. / Tosha, T. / Sugimoto, H. / Owada, S. ...Lucic, M. / Svistunenko, D.A. / Wilson, M.T. / Chaplin, A.K. / Davy, B. / Ebrahim, A. / Axford, D. / Tosha, T. / Sugimoto, H. / Owada, S. / Dworkowski, F.S.N. / Tews, I. / Owen, R.L. / Hough, M.A. / Worrall, J.A.R.
External linksAngew. Chem. Int. Ed. Engl. / PubMed:32780931
MethodsX-ray diffraction
Resolution1.75 - 1.99 Å
Structure data

PDB-6yr4:
Dye-type peroxidase DtpB in the ferryl state: Spectroscopically Validated composite structure
Method: X-RAY DIFFRACTION / Resolution: 1.85 Å

PDB-6yrc:
Spectroscopically-validated structure of DtpB from Streptomyces lividans in the ferric state
Method: X-RAY DIFFRACTION / Resolution: 1.99 Å

PDB-6yrd:
SFX structure of dye-type peroxidase DtpB in the ferryl state
Method: X-RAY DIFFRACTION / Resolution: 1.75 Å

PDB-6yrj:
SFX structure of dye-type peroxidase DtpB in the ferric state
Method: X-RAY DIFFRACTION / Resolution: 1.85 Å

Chemicals

ChemComp-HEM:
PROTOPORPHYRIN IX CONTAINING FE

ChemComp-MG:
Unknown entry

ChemComp-O:
OXYGEN ATOM

ChemComp-PG4:
TETRAETHYLENE GLYCOL / precipitant*YM

ChemComp-HOH:
WATER

ChemComp-7PE:
2-(2-(2-(2-(2-(2-ETHOXYETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHANOL

ChemComp-GOL:
GLYCEROL

Source
  • streptomyces lividans 1326 (bacteria)
KeywordsOXIDOREDUCTASE / peroxidase; dye-decolourising; spectroscopically-validated; DtpB / peroxidase; dye-decolourising; spectroscopically-validated / ferric / peroxidase; dye-decolourising; serial femtosecond crystallography; damage-free; ferryl / peroxidase; dye-decolourising; serial femtosecond crystallography; damage-free; ferric

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