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Structure paper

TitleCrystallographic snapshots of UDP-glucuronic acid 4-epimerase ligand binding, rotation, and reduction.
Journal, issue, pagesJ. Biol. Chem., Vol. 295, Page 12461-12473, Year 2020
Publish dateJun 30, 2020 (structure data deposition date)
AuthorsIacovino, L.G. / Savino, S. / Borg, A.J.E. / Binda, C. / Nidetzky, B. / Mattevi, A.
External linksJ. Biol. Chem. / PubMed:32661196
MethodsX-ray diffraction
Resolution1.5 - 2.2 Å
Structure data

PDB-6zl6:
Crystal Structure of UDP-Glucuronic acid 4-epimerase from Bacillus cereus in complex with UDP and NAD
Method: X-RAY DIFFRACTION / Resolution: 1.7 Å

PDB-6zla:
Crystal Structure of UDP-Glucuronic acid 4-epimerase from Bacillus cereus in complex with NAD
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

PDB-6zld:
Crystal Structure of UDP-Glucuronic acid 4-epimerase from Bacillus cereus in complex with UDP-Glucuronic acid and NAD
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

PDB-6zlj:
Crystal Structure of UDP-Glucuronic acid 4-epimerase Y149F mutant from Bacillus cereus in complex with UDP-4-DEOXY-4-FLUORO-Glucuronic acid and NAD
Method: X-RAY DIFFRACTION / Resolution: 1.7 Å

PDB-6zlk:
Equilibrium Structure of UDP-Glucuronic acid 4-epimerase from Bacillus cereus in complex with UDP-Glucuronic acid/UDP-Galacturonic acid and NAD
Method: X-RAY DIFFRACTION / Resolution: 1.5 Å

PDB-6zll:
Crystal Structure of UDP-Glucuronic acid 4-epimerase from Bacillus cereus in complex with UDP-Galacturonic acid and NAD
Method: X-RAY DIFFRACTION / Resolution: 1.85 Å

Chemicals

ChemComp-UDP:
URIDINE-5'-DIPHOSPHATE / UDP*YM / Uridine diphosphate

ChemComp-NAD:
NICOTINAMIDE-ADENINE-DINUCLEOTIDE / NAD*YM / Nicotinamide adenine dinucleotide

ChemComp-HOH:
WATER / Water

ChemComp-UGA:
URIDINE-5'-DIPHOSPHATE-GLUCURONIC ACID / Uridine diphosphate glucuronic acid

ChemComp-UGF:
(2~{R},3~{S},4~{R},5~{R},6~{R})-6-[[[(2~{R},3~{S},4~{R},5~{R})-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidany

ChemComp-UGB:
(2S,3R,4S,5R,6R)-6-[[[(2R,3S,4R,5R)-5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]oxy-3,4,5-trihydroxy-oxane-2-carboxylic acid

Source
  • bacillus cereus hua2-4 (bacteria)
  • bacillus cereus (bacteria)
KeywordsOXIDOREDUCTASE / epimerase / UDP / NAD / UDP-sugar binding protein / UDP-Glucuronic acid / UDP-4-DEOXY-4-FLUORO-Glucuronic acid / UDP-Galacturonic acid / equilibrium

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