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Structure paper

TitleStructural basis for the specific cleavage of core-fucosylatedN-glycans by endo-beta-N-acetylglucosaminidase from the fungusCordyceps militaris.
Journal, issue, pagesJ. Biol. Chem., Vol. 294, Page 17143-17154, Year 2019
Publish dateAug 15, 2019 (structure data deposition date)
AuthorsSeki, H. / Huang, Y. / Arakawa, T. / Yamada, C. / Kinoshita, T. / Iwamoto, S. / Higuchi, Y. / Takegawa, K. / Fushinobu, S.
External linksJ. Biol. Chem. / PubMed:31548313
MethodsX-ray diffraction
Resolution1.75 - 2.36 Å
Structure data

PDB-6kpl:
Crystal Structure of endo-beta-N-acetylglucosaminidase from Cordyceps militaris in apo form
Method: X-RAY DIFFRACTION / Resolution: 1.75 Å

PDB-6kpm:
Crystal Structure of endo-beta-N-acetylglucosaminidase from Cordyceps militaris in complex with L-fucose
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

PDB-6kpn:
Crystal Structure of endo-beta-N-acetylglucosaminidase from Cordyceps militaris D154N/E156Q mutant in complex with fucosyl-N-acetylglucosamine
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-6kpo:
Crystal Structure of endo-beta-N-acetylglucosaminidase from Cordyceps militaris D154N/E156Q mutant in complex with fucosyl-N-acetylglucosamine-Asn
Method: X-RAY DIFFRACTION / Resolution: 2.36 Å

Chemicals

ChemComp-PGE:
TRIETHYLENE GLYCOL

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER

ChemComp-HOH:
WATER

ChemComp-FUC:
alpha-L-fucopyranose

ChemComp-ASN:
ASPARAGINE

Source
  • cordyceps militaris cm01 (fungus)
KeywordsHYDROLASE / TIM barrel

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