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Structure paper

TitleLow-barrier hydrogen bonds in enzyme cooperativity.
Journal, issue, pagesNature, Vol. 573, Page 609-613, Year 2019
Publish dateAug 7, 2018 (structure data deposition date)
AuthorsDai, S. / Funk, L.M. / von Pappenheim, F.R. / Sautner, V. / Paulikat, M. / Schroder, B. / Uranga, J. / Mata, R.A. / Tittmann, K.
External linksNature / PubMed:31534226
MethodsX-ray diffraction
Resolution1.04 - 1.3 Å
Structure data

PDB-6ha3:
Human transketolase variant E160Q in covalent complex with donor ketose D-fructose-6-phosphate
Method: X-RAY DIFFRACTION / Resolution: 1.08 Å

PDB-6had:
Human transketolase variant E160Q
Method: X-RAY DIFFRACTION / Resolution: 1.04 Å

PDB-6haf:
Pyruvate oxidase variant E59Q from L. plantarum in complex with phosphate
Method: X-RAY DIFFRACTION / Resolution: 1.3 Å

PDB-6rjb:
Human transketolase variant T382E
Method: X-RAY DIFFRACTION / Resolution: 1.15 Å

PDB-6rjc:
E.coli transketolase apoenzyme
Method: X-RAY DIFFRACTION / Resolution: 1.05 Å

Chemicals

ChemComp-T6F:
2-C-{3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-5-(2-{[(R)-hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)-4-methyl-1,3-thiazol-3-ium-2-yl}-6-O-phosphono-D-glucitol

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-NA:
Unknown entry

ChemComp-CA:
Unknown entry

ChemComp-MG:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-TPP:
THIAMINE DIPHOSPHATE

ChemComp-FAD:
FLAVIN-ADENINE DINUCLEOTIDE / FAD*YM

ChemComp-K:
Unknown entry

ChemComp-GOL:
GLYCEROL

ChemComp-PO4:
PHOSPHATE ION

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER

Source
  • homo sapiens (human)
  • lactobacillus plantarum (bacteria)
  • escherichia coli (strain k12) (bacteria)
KeywordsTRANSFERASE / THIAMIN DIPHOSPHATE / TPP / THDP / ENZYME / CATALYSIS / SUGAR METABOLISM / OXIDOREDUCTASE / CARBANION / STRUCTURE ACTIVITY RELATIONSHIP / OXIDATION-REDUCTION / UMPOLUNG / THIAMINE DIPHOSPHATE / REACTION INTERMEDIATE / FLAVIN ADENINE DINUCLEOTIDE / ENZYME CATALYSIS / PENTOSE PHOSPHATE PATHWAY

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