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Structure paper

TitleStructural basis for broad substrate specificity of UDP-glucose 4-epimerase in the human milk oligosaccharide catabolic pathway of Bifidobacterium longum.
Journal, issue, pagesSci Rep, Vol. 9, Page 11081-11081, Year 2019
Publish dateMay 6, 2019 (structure data deposition date)
AuthorsNam, Y.W. / Nishimoto, M. / Arakawa, T. / Kitaoka, M. / Fushinobu, S.
External linksSci Rep / PubMed:31366978
MethodsX-ray diffraction
Resolution1.8 - 2 Å
Structure data

PDB-6k0g:
Crystal Structure of UDP-glucose 4-epimerase from Bifidobacterium longum in complex with NAD+ and UDP
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

PDB-6k0h:
Crystal Structure of UDP-glucose 4-epimerase from Bifidobacterium longum in complex with NAD+ and UDP-GlcNAc
Method: X-RAY DIFFRACTION / Resolution: 2 Å

PDB-6k0i:
Crystal Structure of UDP-glucose 4-epimerase from Bifidobacterium longum in complex with NAD+ and UDP-Glc
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

Chemicals

ChemComp-UDP:
URIDINE-5'-DIPHOSPHATE / UDP*YM

ChemComp-NAD:
NICOTINAMIDE-ADENINE-DINUCLEOTIDE / NAD*YM

ChemComp-MG:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER

ChemComp-UD1:
URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE

ChemComp-UPG:
URIDINE-5'-DIPHOSPHATE-GLUCOSE

Source
  • bifidobacterium longum subsp. longum (strain atcc 15707 / dsm 20219 / jcm 1217 / nctc 11818 / e194b) (bacteria)
KeywordsISOMERASE / Rossmann fold / HYDROLASE

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