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Structure paper

TitleStructural intermediates of a DNA-ligase complex illuminate the role of the catalytic metal ion and mechanism of phosphodiester bond formation.
Journal, issue, pagesNucleic Acids Res., Vol. 47, Page 7147-7162, Year 2019
Publish dateApr 7, 2019 (structure data deposition date)
AuthorsWilliamson, A. / Leiros, H.S.
External linksNucleic Acids Res. / PubMed:31312841
MethodsX-ray diffraction
Resolution1.785 - 2.75 Å
Structure data

PDB-6rar:
Pmar-Lig_PreS3-Mn
Method: X-RAY DIFFRACTION / Resolution: 1.785 Å

PDB-6ras:
Pmar-Lig_Pre.
Method: X-RAY DIFFRACTION / Resolution: 2.75 Å

PDB-6rau:
PostS3_Pmar_lig4_WT
Method: X-RAY DIFFRACTION / Resolution: 1.99 Å

PDB-6rce:
Pmar-Lig_PreS3
Method: X-RAY DIFFRACTION / Resolution: 1.946 Å

Chemicals

ChemComp-MN:
Unknown entry

ChemComp-AMP:
ADENOSINE MONOPHOSPHATE / AMP*YM

ChemComp-SO4:
SULFATE ION

ChemComp-HOH:
WATER

ChemComp-PGE:
TRIETHYLENE GLYCOL

Source
  • prochlorococcus marinus str. mit 9302 (bacteria)
  • synthetic construct (others)
  • dna launch vector pde-gfp2 (others)
  • prochlorococcus marinus (bacteria)
KeywordsDNA BINDING PROTEIN / DNA ligase / ATP-dependent / ligase-DNA co-crystal structure / determinants in DNA binding

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