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Structure paper

TitleStructure and functional reselection of the Mango-III fluorogenic RNA aptamer.
Journal, issue, pagesNat. Chem. Biol., Vol. 15, Page 472-479, Year 2019
Publish dateJul 31, 2018 (structure data deposition date)
AuthorsTrachman 3rd., R.J. / Autour, A. / Jeng, S.C.Y. / Abdolahzadeh, A. / Andreoni, A. / Cojocaru, R. / Garipov, R. / Dolgosheina, E.V. / Knutson, J.R. / Ryckelynck, M. ...Trachman 3rd., R.J. / Autour, A. / Jeng, S.C.Y. / Abdolahzadeh, A. / Andreoni, A. / Cojocaru, R. / Garipov, R. / Dolgosheina, E.V. / Knutson, J.R. / Ryckelynck, M. / Unrau, P.J. / Ferre-D'Amare, A.R.
External linksNat. Chem. Biol. / PubMed:30992561
MethodsX-ray diffraction
Resolution1.55 - 2.9 Å
Structure data

PDB-6e8s:
Structure of the iMango-III aptamer bound to TO1-Biotin
Method: X-RAY DIFFRACTION / Resolution: 2.35 Å

PDB-6e8t:
Structure of the Mango-III (A10U) aptamer bound to TO1-Biotin
Method: X-RAY DIFFRACTION / Resolution: 2.9 Å

PDB-6e8u:
Structure of the Mango-III (A10U) aptamer bound to TO1-Biotin
Method: X-RAY DIFFRACTION / Resolution: 1.55 Å

Chemicals

ChemComp-EKJ:
4-[(3-{2-[(2-methoxyethyl)amino]-2-oxoethyl}-1,3-benzothiazol-3-ium-2-yl)methyl]-1-methylquinolin-1-ium

ChemComp-K:
Unknown entry

ChemComp-MG:
Unknown entry

ChemComp-NA:
Unknown entry

ChemComp-SPM:
SPERMINE

ChemComp-HOH:
WATER

ChemComp-HZG:
1-methyl-4-{[3-(2-oxopropyl)-1,3-benzothiazol-3-ium-2-yl]methyl}quinolin-1-ium

ChemComp-HZD:
4-[(3-{2,16-dioxo-20-[(3aR,4R,6aS)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]-6,9,12-trioxa-3,15-diazaicosan-1-yl}-1,3-benzothiazol-3-ium-2-yl)methyl]-1-methylquinolin-1-ium

Source
  • synthetic construct (others)
KeywordsRNA / Aptamer / fluorescence / G-quadruplex

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