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Structure paper

TitleThe 1-beta-methyl group confers a lower affinity of l,d-transpeptidase LdtMt2for ertapenem than for imipenem.
Journal, issue, pagesBiochem. Biophys. Res. Commun., Vol. 510, Page 254-260, Year 2019
Publish dateDec 17, 2018 (structure data deposition date)
AuthorsZhao, F. / Hou, Y.J. / Zhang, Y. / Wang, D.C. / Li, D.F.
External linksBiochem. Biophys. Res. Commun. / PubMed:30686533
MethodsX-ray diffraction
Resolution1.5 - 1.6 Å
Structure data

PDB-6iyv:
Crystal sturucture of L,D-transpeptidase LdtMt2 from Mycobacterium tuberculosis in complex with ertapenem adduct
Method: X-RAY DIFFRACTION / Resolution: 1.5 Å

PDB-6iyw:
Crystal sturucture of L,D-transpeptidase LdtMt2 from Mycobacterium tuberculosis in complex with Imipenem adduct
Method: X-RAY DIFFRACTION / Resolution: 1.6 Å

Chemicals

ChemComp-2RG:
(2S,3R,4S)-4-({(3S,5S)-5-[(3-carboxyphenyl)carbamoyl]pyrrolidin-3-yl}sulfanyl)-2-[(1S,2R)-1-formyl-2-hydroxypropyl]-3-methyl-3,4-dihydro-2H-pyrrole-5-carboxylic acid / medication, antibiotic*YM

ChemComp-GOL:
GLYCEROL

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER

ChemComp-SO4:
SULFATE ION

ChemComp-TRS:
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL / pH buffer*YM

ChemComp-HOH:
WATER

ChemComp-IM2:
(5R)-5-[(1S,2R)-1-formyl-2-hydroxypropyl]-3-[(2-{[(E)-iminomethyl]amino}ethyl)sulfanyl]-4,5-dihydro-1H-pyrrole-2-carbox / antibiotic*YM

Source
  • mycobacterium tuberculosis (strain atcc 25618 / h37rv) (bacteria)
KeywordsTRANSFERASE / LD-TRANSPEPTIDASE / PEPTIDOGLYCAN SYNTHESIS ENZYME / beta-lactam binding

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