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Structure paper

TitleAn endogenous dAMP ligand inBacillus subtilisclass Ib RNR promotes assembly of a noncanonical dimer for regulation by dATP.
Journal, issue, pagesProc. Natl. Acad. Sci. U.S.A., Vol. 115, Page E4594-E4603, Year 2018
Publish dateFeb 20, 2018 (structure data deposition date)
AuthorsParker, M.J. / Maggiolo, A.O. / Thomas, W.C. / Kim, A. / Meisburger, S.P. / Ando, N. / Boal, A.K. / Stubbe, J.
External linksProc. Natl. Acad. Sci. U.S.A. / PubMed:29712847
MethodsX-ray diffraction
Resolution2 - 3.2 Å
Structure data

PDB-6cgl:
X-ray crystal structure of Bacillus subtilis ribonucleotide reductase NrdE alpha subunit dAMP-bound as-isolated (pH 4)
Method: X-RAY DIFFRACTION / Resolution: 3.2 Å

PDB-6cgm:
X-ray crystal structure of Bacillus subtilis ribonucleotide reductase NrdE alpha subunit (nucleotide free)
Method: X-RAY DIFFRACTION / Resolution: 2 Å

PDB-6cgn:
X-ray crystal structure of Bacillus subtilis ribonucleotide reductase NrdE alpha subunit dAMP-bound (pH 7)
Method: X-RAY DIFFRACTION / Resolution: 2.26 Å

Chemicals

ChemComp-D5M:
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE

ChemComp-SO4:
SULFATE ION

ChemComp-HOH:
WATER

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-PO4:
PHOSPHATE ION

Source
  • bacillus subtilis (bacteria)
KeywordsOXIDOREDUCTASE / ribonucleotide reductase / allostery / nucleotide metabolism / dAMP

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