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Structure paper

TitleStructural and Biochemical Insights into Dimethylsulfoniopropionate Cleavage by Cofactor-Bound DddK from the Prolific Marine Bacterium Pelagibacter.
Journal, issue, pagesBiochemistry, Vol. 56, Page 2873-2885, Year 2017
Publish dateSep 27, 2016 (structure data deposition date)
AuthorsSchnicker, N.J. / De Silva, S.M. / Todd, J.D. / Dey, M.
External linksBiochemistry / PubMed:28511016
MethodsX-ray diffraction
Resolution1.44 - 2.2 Å
Structure data

PDB-5tfz:
Crystal structure of the dimethylsulfoniopropionate (DMSP) lyase DddK complexed with nickel and diacrylate
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

PDB-5tg0:
Crystal structure of the dimethylsulfoniopropionate (DMSP) lyase DddK complexed with iron and zinc
Method: X-RAY DIFFRACTION / Resolution: 1.44 Å

Chemicals

ChemComp-NI:
NICKEL (II) ION

ChemComp-7BC:
3-(acryloyloxy)propanoic acid

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER

ChemComp-HOH:
WATER

ChemComp-FE:
Unknown entry

ChemComp-ZN:
Unknown entry

Source
  • pelagibacter ubique (strain htcc1062) (bacteria)
KeywordsOXIDOREDUCTASE / DMSP lyase / Cupin / Nickel dependent / Metal binding / LYASE

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