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Structure paper

TitleThe Streptomyces master regulator BldD binds c-di-GMP sequentially to create a functional BldD2-(c-di-GMP)4 complex.
Journal, issue, pagesNucleic Acids Res., Vol. 45, Page 6923-6933, Year 2017
Publish dateNov 21, 2016 (structure data deposition date)
AuthorsSchumacher, M.A. / Zeng, W. / Findlay, K.C. / Buttner, M.J. / Brennan, R.G. / Tschowri, N.
External linksNucleic Acids Res. / PubMed:28449057
MethodsX-ray diffraction
Resolution1.749 - 2.5 Å
Structure data

PDB-5tzd:
Structure of the WT S. venezulae BldD-(CTD-c-di-GMP)2 assembly intermediate
Method: X-RAY DIFFRACTION / Resolution: 1.749 Å

PDB-5tzf:
Structure of the BldD CTD(D116A)-(c-di-GMP)2 intermediate, form 1
Method: X-RAY DIFFRACTION / Resolution: 2.4 Å

PDB-5tzg:
Structure of the BldD CTD(D116A)-(c-di-GMP)2, form 2
Method: X-RAY DIFFRACTION / Resolution: 2.5 Å

Chemicals

ChemComp-C2E:
9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)

ChemComp-HOH:
WATER

ChemComp-ZN:
Unknown entry

Source
  • streptomyces venezuelae (bacteria)
KeywordsDNA BINDING PROTEIN / BldD / assembly intermediate / antibiotics / c-di-GMP / Streptomyces

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