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Structure paper

TitleThrough-bond effects in the ternary complexes of thrombin sandwiched by two DNA aptamers.
Journal, issue, pagesNucleic Acids Res., Vol. 45, Page 461-469, Year 2017
Publish dateNov 20, 2015 (structure data deposition date)
AuthorsPica, A. / Russo Krauss, I. / Parente, V. / Tateishi-Karimata, H. / Nagatoishi, S. / Tsumoto, K. / Sugimoto, N. / Sica, F.
External linksNucleic Acids Res. / PubMed:27899589
MethodsX-ray diffraction
Resolution2.95 - 3.59 Å
Structure data

PDB-5ew1:
Human thrombin sandwiched between two DNA aptamers: HD22 and HD1-deltaT3
Method: X-RAY DIFFRACTION / Resolution: 2.95 Å

PDB-5ew2:
Human thrombin sandwiched between two DNA aptamers: HD22 and HD1-deltaT12
Method: X-RAY DIFFRACTION / Resolution: 3.59 Å

Chemicals

ChemComp-NAG:
2-acetamido-2-deoxy-beta-D-glucopyranose

ChemComp-0G6:
D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide

ChemComp-NA:
Unknown entry

ChemComp-HOH:
WATER

Source
  • homo sapiens (human)
Keywordsprotein/dna / PROTEIN-DNA COMPLEX / BLOOD COAGULATION / DNA APTAMER / DNA-INHIBITOR / G-QUADRUPLEX / DUPLEX-QUADRUPLEX JUNCTION / SERINE PROTEASE / HYDROLASE / ABASIC FURAN / HYDROLASE-DNA COMPLEX

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