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Structure paper

TitleThe Mg2+-containing Water Cluster of Mammalian Cytochrome c Oxidase Collects Four Pumping Proton Equivalents in Each Catalytic Cycle.
Journal, issue, pagesJ. Biol. Chem., Vol. 291, Page 23882-23894, Year 2016
Publish dateDec 1, 2015 (structure data deposition date)
AuthorsYano, N. / Muramoto, K. / Shimada, A. / Takemura, S. / Baba, J. / Fujisawa, H. / Mochizuki, M. / Shinzawa-Itoh, K. / Yamashita, E. / Tsukihara, T. / Yoshikawa, S.
External linksJ. Biol. Chem. / PubMed:27605664
MethodsX-ray diffraction
Resolution1.5 - 1.6 Å
Structure data

PDB-5b1a:
Bovine heart cytochrome c oxidase in the fully oxidized state at 1.5 angstrom resolution
Method: X-RAY DIFFRACTION / Resolution: 1.5 Å

PDB-5b1b:
Bovine heart cytochrome c oxidase in the fully reduced state at 1.6 angstrom resolution
Method: X-RAY DIFFRACTION / Resolution: 1.6 Å

PDB-7ypy:
Bovine heart cytochrome c oxidase in fully oxidized state at 1.5 angstrom resolution
Method: X-RAY DIFFRACTION / Resolution: 1.5 Å

Chemicals

ChemComp-HEA:
HEME-A

ChemComp-CU:
COPPER (II) ION

ChemComp-MG:
Unknown entry

ChemComp-NA:
Unknown entry

ChemComp-PER:
PEROXIDE ION

ChemComp-PGV:
(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE / phospholipid*YM

ChemComp-TGL:
TRISTEAROYLGLYCEROL

ChemComp-CUA:
DINUCLEAR COPPER ION

ChemComp-CHD:
CHOLIC ACID

ChemComp-PSC:
(7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE / phospholipid*YM

ChemComp-UNX:
Unknown entry

ChemComp-CDL:
CARDIOLIPIN / phospholipid*YM

ChemComp-PEK:
(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE / phospholipid*YM

ChemComp-ZN:
Unknown entry

ChemComp-DMU:
DECYL-BETA-D-MALTOPYRANOSIDE / detergent*YM

ChemComp-HOH:
WATER

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-PO4:
PHOSPHATE ION

Source
  • bos taurus (domestic cattle)
KeywordsOXIDOREDUCTASE / Proton pump / Heme / Respiratory chain / Respiratory enzyme / Membrane protein / Hemeprotein / Protein complex

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