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Structure paper

TitleA Photoisomerizing Rhodopsin Mimic Observed at Atomic Resolution.
Journal, issue, pagesJ. Am. Chem. Soc., Vol. 138, Page 8802-8808, Year 2016
Publish dateFeb 19, 2015 (structure data deposition date)
AuthorsNosrati, M. / Berbasova, T. / Vasileiou, C. / Borhan, B. / Geiger, J.H.
External linksJ. Am. Chem. Soc. / PubMed:27310917
MethodsX-ray diffraction
Resolution1.57 - 2.144 Å
Structure data

PDB-4ybp:
Crystal structure of the R111K:Y134F:T54V:R132Q:P39Q:R59Y mutant of human cellular retinoic acid binding proteinii with retinal after 24 hour incubation at 1.83 angstrom resolution - thermodynamic product - 1st cycle
Method: X-RAY DIFFRACTION / Resolution: 1.831 Å

PDB-4ybu:
Crystal structure of the R111K:Y134F:T54V:R132Q:P39Q:R59Y mutant of human Cellular Retinoic Acid Binding ProteinII in complex with Retinal after 24 h incubation and 1 hour UV irradiation at 1.92 angstrom - 1st cycle
Method: X-RAY DIFFRACTION / Resolution: 1.924 Å

PDB-4yce:
Crystal structure of the R111K:Y134F:T54V:R132Q:P39Q:R59Y mutant of human cellular retinoic acid binding proteinii with retinal at 1.95 angstrom- visible light irradiated crystal for 1 hour - 2nd cycle
Method: X-RAY DIFFRACTION / Resolution: 1.953 Å

PDB-4ych:
Crystal Structure of R111K:Y134F:T54V:R132Q:P39Q:R59Y mutant of human Cellular Retinoic Acid Binding ProteinII with Retinal at 1.96 Angstrom - UV irradiated Crystal for 1 hour - 2nd cycle
Method: X-RAY DIFFRACTION / Resolution: 1.96 Å

PDB-4yda:
Crystal structure of R111K:Y134F:T54V:R132Q:P39Q:R59Y mutant of human cellular retinoic acid binding proteinii with retinal at 1.95 angstrom - after 1hour visible light irradiation - 3rd cycle
Method: X-RAY DIFFRACTION / Resolution: 1.951 Å

PDB-4ydb:
Crystal structure of the R111K:Y134F:T54V:R132Q:P39Q:R59Y mutant of human Cellular Retinoic Acid Binding Protein II in complex with Retinal at 2.03 angstrom -UV irradiated crystal- 3rd cycle
Method: X-RAY DIFFRACTION / Resolution: 2.03 Å

PDB-4yfp:
CRYSTAL STRUCTURE OF THE R111K:Y134F:T54V:R132Q:P39Y:R59Y MUTANT OF HUMAN CELLULAR RETINOIC ACID BINDING PROTEIN II WITH RETINAL AFTER 20 MINUTES INCUBATION AT 1.95 ANGSTROM RESOLUTION-Kinetic Product
Method: X-RAY DIFFRACTION / Resolution: 1.951 Å

PDB-4yfq:
CRYSTAL STRUCTURE OF THE R111K:Y134F:T54V:R132Q:P39Y:R59Y MUTANT OF HUMAN CELLULAR RETINOIC ACID BINDING PROTEINII WITH RETINAL AFTER 24 HOURS INCUBATION AT 1.62 ANGSTROM RESOLUTION - Thermodynamic product - 1st cycle
Method: X-RAY DIFFRACTION / Resolution: 1.62 Å

PDB-4yfr:
Crystal structure of the R111K:Y134F:T54V:R132Q:P39Y:R59Y mutant of human Cellular Retinoic Acid Binding Protein II with Retinal at 1.95 Angstrom Resolution - UV irradiated crystal for 30 minutes - 1st Cycle
Method: X-RAY DIFFRACTION / Resolution: 1.952 Å

PDB-4ygg:
CRYSTAL STRUCTURE OF R111K:Y134F:T54V:R132Q:P39Y:R59Y MUTANT OF HUMAN CELLULAR RETINOIC ACID BINDING PROTEIN II WITH RETINAL AT 1.9 ANGSTROM RESOLUTION - VISIBLE LIGHT IRRADIATED CRYSTAL - 2ND CYCLE
Method: X-RAY DIFFRACTION / Resolution: 1.9 Å

PDB-4ygh:
Crystal Structure of R111K:Y134F:T54V:R132Q:P39Y:R59Y mutant of human Cellular Retinoic Acid Binding Protein II with Retinal at 2.1 Angstrom resolution - UV irradiated crystal - 2nd cycle
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-4ygz:
CRYSTAL STRUCTURE OF THE R111K:Y134F:T54V:R132Q:P39Y:R59Y MUTANT OF HUMAN CELLULAR RETINOIC ACID BINDING PROTEIN II WITH RETINAL AT 2.06 ANGSTROM RESOLUTION - VISIBLE LIGHT IRRADIATED CRYSTAL -3RD CYCLE
Method: X-RAY DIFFRACTION / Resolution: 2.06 Å

PDB-4yh0:
Crystal structure of the R111K:Y134F:T54V:R132Q:P39Y:R59Y mutant of human Cellular Retinoic Acid Binding Protein II in complex with Retinal at 2.14 angstrom resolution - UV irradiated crystal - 3rd cycle
Method: X-RAY DIFFRACTION / Resolution: 2.144 Å

PDB-4ykm:
Crystal structure of the R111K:Y134F:T54V:R132Q:P39Q:R59Y:A32W:F3Q mutant of human Cellular Retinoic Acid Binding Protein II with Retinal at 1.58 angstrom resolution
Method: X-RAY DIFFRACTION / Resolution: 1.58 Å

PDB-4yko:
Crystal structure of the R111K:Y134F:T54V:R132Q:P39Q:R59Y:A32Y:F3Q mutant of human Cellular Retinoic Acid Binding Protein II with Retinal at 1.58 angstrom resolution
Method: X-RAY DIFFRACTION / Resolution: 1.57 Å

Chemicals

ChemComp-RET:
RETINAL / Retinal

ChemComp-HOH:
WATER / Water

Source
  • homo sapiens (human)
KeywordsTRANSPORT PROTEIN / Protein Engineering / Photo switchable proteins / Retinal isomerization / Retinal Protonated Schiff Base pKa change / Photoswitchable protein / Retinal PSB / Retinal iminium pKa change by isomerization / Photo switchable protein / Retinal PSB pKa change / pKa change of retinal PSB / rhodopsin mimic / Retinal iminium protonated Schiff base pKa change / Photo swithcable protein / Retinal iminium pKa change

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