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Structure paper

TitleCrystal structures of beta-primeverosidase in complex with disaccharide amidine inhibitors.
Journal, issue, pagesJ. Biol. Chem., Vol. 289, Page 16826-16834, Year 2014
Publish dateJan 22, 2014 (structure data deposition date)
AuthorsSaino, H. / Shimizu, T. / Hiratake, J. / Nakatsu, T. / Kato, H. / Sakata, K. / Mizutani, M.
External linksJ. Biol. Chem. / PubMed:24753293
MethodsX-ray diffraction
Resolution1.8 - 1.9 Å
Structure data

PDB-3wq4:
Crystal structure of beta-primeverosidase
Method: X-RAY DIFFRACTION / Resolution: 1.9 Å

PDB-3wq5:
beta-Primeverosidase in complex with disaccharide substrate-analog N-beta-primeverosylamidine, natural aglycone derivative
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

PDB-3wq6:
beta-Primeverosidase in complex with disaccharide substrate-analog N-beta-primeverosylamidine, artificial aglycone derivative
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

Chemicals

ChemComp-NAG:
2-acetamido-2-deoxy-beta-D-glucopyranose

ChemComp-HOH:
WATER

ChemComp-VPA:
2-phenyl-N-(6-O-beta-D-xylopyranosyl-beta-D-glucopyranosyl)ethylamidine

ChemComp-ZPA:
4-(N-benzylsuccinimide-3-sulfanyl)-N-(6-O-beta-D-xylopyranosyl-beta-D-glucopyranosyl)butylamidine

Source
  • camellia sinensis (black tea)
KeywordsHYDROLASE / DIGLYCOSIDASE / DIGLYCOSIDE / DISACCHARIDE / GLYCOSIDE HYDROLASE FAMILY 1 (GH1) / (BETA/ALPHA)8 BARREL / SPECIFIC HYDROLYSIS OF BETA-PRIMEVEROSIDES / AROMA FORMATION / OOLONG TEA / BLACK TEA

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