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Structure paper

TitleStructure and Haem-Distal Site Plasticity in Methanosarcina Acetivorans Protoglobin.
Journal, issue, pagesPlos One, Vol. 8, Page 66144-, Year 2013
Publish dateJan 18, 2013 (structure data deposition date)
AuthorsPesce, A. / Tilleman, L. / Donne, J. / Aste, E. / Ascenzi, P. / Ciaccio, C. / Coletta, M. / Moens, L. / Viappiani, C. / Dewilde, S. ...Pesce, A. / Tilleman, L. / Donne, J. / Aste, E. / Ascenzi, P. / Ciaccio, C. / Coletta, M. / Moens, L. / Viappiani, C. / Dewilde, S. / Bolognesi, M. / Nardini, M.
External linksPlos One / PubMed:23776624
MethodsX-ray diffraction
Resolution1.38 - 3 Å
Structure data

PDB-3zjh:
Trp(60)B9Ala mutation of M.acetivorans protoglobin in complex with cyanide
Method: X-RAY DIFFRACTION / Resolution: 1.7 Å

PDB-3zji:
Tyr(61)B10Ala mutation of M.acetivorans protoglobin in complex with cyanide
Method: X-RAY DIFFRACTION / Resolution: 1.5 Å

PDB-3zjj:
Phe(93)E11Leu mutation of M.acetivorans protoglobin in complex with cyanide
Method: X-RAY DIFFRACTION / Resolution: 2 Å

PDB-3zjl:
Leu(142)G4Ala mutation of M.acetivorans protoglobin in complex with cyanide
Method: X-RAY DIFFRACTION / Resolution: 1.5 Å

PDB-3zjm:
Ile(149)G11Phe mutation of M.acetivorans protoglobin in complex with cyanide
Method: X-RAY DIFFRACTION / Resolution: 1.5 Å

PDB-3zjn:
M.acetivorans protoglobin in complex with cyanide
Method: X-RAY DIFFRACTION / Resolution: 1.6 Å

PDB-3zjo:
M.acetivorans protoglobin in complex with azide
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

PDB-3zjp:
M.acetivorans protoglobin in complex with imidazole
Method: X-RAY DIFFRACTION / Resolution: 1.38 Å

PDB-3zjq:
M.acetivorans protoglobin in complex with nicotinamide
Method: X-RAY DIFFRACTION / Resolution: 1.9 Å

PDB-3zjr:
M.acetivorans protoglobin in complex with cyanide and Xenon
Method: X-RAY DIFFRACTION / Resolution: 3 Å

PDB-3zjs:
M.acetivorans protoglobin in complex with azide and Xenon
Method: X-RAY DIFFRACTION / Resolution: 2.3 Å

Chemicals

ChemComp-HEM:
PROTOPORPHYRIN IX CONTAINING FE

ChemComp-CYN:
CYANIDE ION

ChemComp-HOH:
WATER

ChemComp-GOL:
GLYCEROL

ChemComp-IPA:
ISOPROPYL ALCOHOL / alkaloid*YM

ChemComp-EPE:
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID / pH buffer*YM

ChemComp-PO4:
PHOSPHATE ION

ChemComp-AZI:
AZIDE ION

ChemComp-IMD:
IMIDAZOLE

ChemComp-NCA:
NICOTINAMIDE / medication*YM

ChemComp-XE:
XENON

Source
  • methanosarcina acetivorans (archaea)
KeywordsIRON-BINDING PROTEIN / HAEM-DISTAL SITE MUTATION / CYANIDE COMPLEX / CYANIDE COM / AZIDE COMPLEX / CYANIDE-XENON COMPLEX / AZIDE-XENON COMPLEX

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