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TitleRecognition of O6-benzyl-2'-deoxyguanosine by a perimidinone-derived synthetic nucleoside: a DNA interstrand stacking interaction.
Journal, issue, pagesNucleic Acids Res., Vol. 41, Page 7566-7576, Year 2013
Publish dateNov 9, 2012 (structure data deposition date)
AuthorsKowal, E.A. / Lad, R.R. / Pallan, P.S. / Dhummakupt, E. / Wawrzak, Z. / Egli, M. / Sturla, S.J. / Stone, M.P.
External linksNucleic Acids Res. / PubMed:23748954
MethodsNMR (solution) / X-ray diffraction
Resolution1.7 Å
Structure data

PDB-2m11:
Structure of perimidinone-derived synthetic nucleoside paired with guanine in DNA duplex
Method: SOLUTION NMR

PDB-4hqi:
Structure of O6-Benzyl-2'-deoxyguanosine opposite perimidinone-derived synthetic nucleoside in DNA duplex
Method: X-RAY DIFFRACTION / Resolution: 1.7 Å

Chemicals

ChemComp-SPM:
SPERMINE

ChemComp-SR:
STRONTIUM ION

ChemComp-HOH:
WATER

Source
  • synthetic construct (others)
KeywordsDNA / B-form DNA / dPer / Perimidinone-Derived Nucleoside / Dickerson-Drew Dodecamer / O6-Benzyl-2'-deoxyguanosine

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