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Structure paper

TitleStructural and Mechanistic Basis for Enhanced Translational Efficiency by 2-Thiouridine at the tRNA Anticodon Wobble Position.
Journal, issue, pagesJ. Mol. Biol., Vol. 425, Page 3888-3906, Year 2013
Publish dateMar 28, 2013 (structure data deposition date)
AuthorsRodriguez-Hernandez, A. / Spears, J.L. / Gaston, K.W. / Limbach, P.A. / Gamper, H. / Hou, Y.M. / Kaiser, R. / Agris, P.F. / Perona, J.J.
External linksJ. Mol. Biol. / PubMed:23727144
MethodsX-ray diffraction
Resolution2.3 - 2.5 Å
Structure data

PDB-4jxx:
Crystal structure of E coli E. coli glutaminyl-tRNA synthetase bound to tRNA(Gln)(CUG) and ATP from novel cryostabilization conditions
Method: X-RAY DIFFRACTION / Resolution: 2.3 Å

PDB-4jxz:
Structure of E. coli glutaminyl-tRNA synthetase bound to ATP and a tRNA(Gln) acceptor containing a UUG anticodon
Method: X-RAY DIFFRACTION / Resolution: 2.4 Å

PDB-4jyz:
Crystal structure of E. coli glutaminyl-tRNA synthetase bound to ATP and native tRNA(Gln) containing the cmnm5s2U34 anticodon wobble base
Method: X-RAY DIFFRACTION / Resolution: 2.5 Å

Chemicals

ChemComp-ATP:
ADENOSINE-5'-TRIPHOSPHATE / ATP, energy-carrying molecule*YM

ChemComp-SO4:
SULFATE ION

ChemComp-HOH:
WATER

Source
  • escherichia coli (E. coli)
  • synthetic construct (others)
Keywordsligase/rna / Rossmann fold / protein-RNA complex / transfer RNA / tRNA aminoacylation / tRNA(Gln) / ligase-rna complex / protein translation / aminoacyl-tRNA synthetase / LIGASE

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