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Structure paper

TitleThe structure of the yeast NADH dehydrogenase (Ndi1) reveals overlapping binding sites for water- and lipid-soluble substrates.
Journal, issue, pagesProc. Natl. Acad. Sci. USA, Vol. 109, Page 15247-15252, Year 2012
Publish dateJul 24, 2012 (structure data deposition date)
AuthorsIwata, M. / Lee, Y. / Yamashita, T. / Yagi, T. / Iwata, S. / Cameron, A.D. / Maher, M.J.
External linksProc. Natl. Acad. Sci. USA / PubMed:22949654
MethodsX-ray diffraction
Resolution2.7 - 3 Å
Structure data

PDB-4g9k:
Structure of the Ndi1 protein from Saccharomyces cerevisiae
Method: X-RAY DIFFRACTION / Resolution: 2.7 Å

PDB-4gap:
Structure of the Ndi1 protein from Saccharomyces cerevisiae in complex with NAD+
Method: X-RAY DIFFRACTION / Resolution: 2.9 Å

PDB-4gav:
Structure of the Ndi1 protein from Saccharomyces cerevisiae in complex with quinone
Method: X-RAY DIFFRACTION / Resolution: 3 Å

Chemicals

ChemComp-FAD:
FLAVIN-ADENINE DINUCLEOTIDE / FAD*YM

ChemComp-HOH:
WATER

ChemComp-NAD:
NICOTINAMIDE-ADENINE-DINUCLEOTIDE / NAD*YM

ChemComp-UQ2:
UBIQUINONE-2

Source
  • saccharomyces cerevisiae (brewer's yeast)
KeywordsOXIDOREDUCTASE / NADH:quinone oxidoreductase / membrane / Nucleotide-binding domains / Nucleotide-binding domain

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