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Structure paper

TitleStructural and Biochemical Characterization of the Vaccinia Virus Envelope Protein D8 and Its Recognition by the Antibody LA5.
Journal, issue, pagesJ. Virol., Vol. 86, Page 8050-8058, Year 2012
Publish dateMar 21, 2012 (structure data deposition date)
AuthorsMatho, M.H. / Maybeno, M. / Benhnia, M.R. / Becker, D. / Meng, X. / Xiang, Y. / Crotty, S. / Peters, B. / Zajonc, D.M.
External linksJ. Virol. / PubMed:22623786
MethodsX-ray diffraction
Resolution1.42 - 2.1 Å
Structure data

PDB-4e9o:
Vaccinia D8L ectodomain structure
Method: X-RAY DIFFRACTION / Resolution: 1.42 Å

PDB-4ebq:
Fab structure of anti-Vaccinia virus D8L antigen mouse IgG2a LA5
Method: X-RAY DIFFRACTION / Resolution: 1.6 Å

PDB-4etq:
Vaccinia virus D8L IMV envelope protein in complex with Fab of murine IgG2a LA5
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

Chemicals

ChemComp-IOD:
IODIDE ION

ChemComp-HOH:
WATER

ChemComp-GOL:
GLYCEROL

ChemComp-CL:
Unknown entry

ChemComp-PO4:
PHOSPHATE ION

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-SCN:
THIOCYANATE ION

Source
  • vaccinia virus
  • mus musculus (house mouse)
KeywordsVIRAL PROTEIN / CAH alpha fold / Vp7 motif / beta sheet / cell surface chondroitin binding / viral entry / chondroitin sulfate / IMMUNE SYSTEM / variable domain / constant domain / CDR / hypervariable region / neutralizing antibody / vaccinia virus / D8L envelope protein / conformational epitope / discontinuous epitope / D8L antigen binding / neutralizing mAb in presence of complement / D8L vaccinia envelope protein / papain treatment / IMMUNE SYSTEM/VIRAL PROTEIN / IgG2a / IgG domain / carbonic anhydrase fold / loose knot / chondroitin-sulfate binding site / delta 262 / IMMUNE SYSTEM-VIRAL PROTEIN complex

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