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Structure paper

TitleMetal-mediated affinity and orientation specificity in a computationally designed protein homodimer.
Journal, issue, pagesJ. Am. Chem. Soc., Vol. 134, Page 375-385, Year 2012
Publish dateDec 9, 2011 (structure data deposition date)
AuthorsDer, B.S. / Machius, M. / Miley, M.J. / Mills, J.L. / Szyperski, T. / Kuhlman, B.
External linksJ. Am. Chem. Soc. / PubMed:22092237
MethodsX-ray diffraction
Resolution0.98 - 1.28 Å
Structure data

PDB-3v1a:
Crystal structure of de novo designed MID1-apo1
Method: X-RAY DIFFRACTION / Resolution: 0.98 Å

PDB-3v1b:
Crystal structure of de novo designed MID1-apo2
Method: X-RAY DIFFRACTION / Resolution: 1.28 Å

PDB-3v1c:
Crystal structure of de novo designed MID1-zinc
Method: X-RAY DIFFRACTION / Resolution: 1.129 Å

PDB-3v1d:
Crystal structure of de novo designed MID1-cobalt
Method: X-RAY DIFFRACTION / Resolution: 1.239 Å

PDB-3v1e:
Crystal structure of de novo designed MID1-zinc H12E mutant
Method: X-RAY DIFFRACTION / Resolution: 1.073 Å

PDB-3v1f:
Crystal structure of de novo designed MID1-zinc H35E mutant
Method: X-RAY DIFFRACTION / Resolution: 1.151 Å

Chemicals

ChemComp-HOH:
WATER

ChemComp-GOL:
GLYCEROL

ChemComp-ZN:
Unknown entry

ChemComp-TLA:
L(+)-TARTARIC ACID


ChemComp, No image

ChemComp-UNL:
Unknown ligand

ChemComp-CO:
Unknown entry

ChemComp-1PE:
PENTAETHYLENE GLYCOL / precipitant*YM

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-ACT:
ACETATE ION

Source
  • artificial gene (others)
KeywordsDE NOVO PROTEIN / METAL BINDING PROTEIN / Helix-turn-helix / metal binding / homodimer / HYDROLASE / Zinc homodimerization

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