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Structure paper

TitleComputational design of high-affinity epitope scaffolds by backbone grafting of a linear epitope.
Journal, issue, pagesJ. Mol. Biol., Vol. 415, Page 175-192, Year 2012
Publish dateApr 6, 2011 (structure data deposition date)
AuthorsAzoitei, M.L. / Ban, Y.E. / Julien, J.P. / Bryson, S. / Schroeter, A. / Kalyuzhniy, O. / Porter, J.R. / Adachi, Y. / Baker, D. / Pai, E.F. / Schief, W.R.
External linksJ. Mol. Biol. / PubMed:22061265
MethodsX-ray diffraction
Resolution1.8 - 2.8 Å
Structure data

PDB-3rfn:
Epitope backbone grafting by computational design for improved presentation of linear epitopes on scaffold proteins
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

PDB-3rhu:
Epitope backbone grafting by computational design for improved presentation of linear epitopes on scaffold proteins
Method: X-RAY DIFFRACTION / Resolution: 2.8 Å

PDB-3ri0:
Epitope backbone grafting by computational design for improved presentation of linear epitopes on scaffold proteins
Method: X-RAY DIFFRACTION / Resolution: 2.25 Å

PDB-3rij:
Epitope backbone grafting by computational design for improved presentation of linear epitopes on scaffold proteins
Method: X-RAY DIFFRACTION / Resolution: 2.3 Å

Chemicals

ChemComp-ZN:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-GOL:
GLYCEROL

ChemComp-SO4:
SULFATE ION

Source
  • pyrococcus horikoshii (archaea)
  • thermus thermophilus (bacteria)
KeywordsDE NOVO PROTEIN / protein grafting / flexible backbone design / epitope-scaffold / HIV / immunogen design

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