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TitleConformational basis for substrate recognition and regulation of catalytic activity in Staphylococcus aureus nucleoside di-phosphate kinase.
Journal, issue, pagesBiochim. Biophys. Acta, Vol. 1814, Page 1349-1357, Year 2011
Publish dateJan 6, 2011 (structure data deposition date)
AuthorsSrivastava, S.K. / Rajasree, K. / Gopal, B.
External linksBiochim. Biophys. Acta / PubMed:21745603
MethodsX-ray diffraction
Resolution2.22 - 2.9 Å
Structure data

PDB-3q83:
Crystal structure of Staphylococcus aureus nucleoside diphosphate kinase
Method: X-RAY DIFFRACTION / Resolution: 2.5 Å

PDB-3q86:
Crystal structure of Staphylococcus aureus nucleoside diphosphate kinase complexed with GTP
Method: X-RAY DIFFRACTION / Resolution: 2.38 Å

PDB-3q89:
Crystal structure of Staphylococcus aureus nucleoside diphosphate kinase complexed with CDP
Method: X-RAY DIFFRACTION / Resolution: 2.9 Å

PDB-3q8u:
Crystal structure of Staphylococcus aureus nucleoside diphosphate kinase complexed with ADP
Method: X-RAY DIFFRACTION / Resolution: 2.22 Å

PDB-3q8v:
Crystal structure of Staphylococcus aureus nucleoside diphosphate kinase complexed with UDP
Method: X-RAY DIFFRACTION / Resolution: 2.5 Å

PDB-3q8y:
Crystal structure of Staphylococcus aureus nucleoside diphosphate kinase complexed with ADP and Vanadate
Method: X-RAY DIFFRACTION / Resolution: 2.7 Å

Chemicals

ChemComp-HOH:
WATER

ChemComp-GTP:
GUANOSINE-5'-TRIPHOSPHATE / GTP, energy-carrying molecule*YM

ChemComp-MG:
Unknown entry

ChemComp-CDP:
CYTIDINE-5'-DIPHOSPHATE

ChemComp-ADP:
ADENOSINE-5'-DIPHOSPHATE / ADP, energy-carrying molecule*YM

ChemComp-UDP:
URIDINE-5'-DIPHOSPHATE / UDP*YM

ChemComp-VO4:
VANADATE ION

Source
  • staphylococcus aureus subsp. aureus (bacteria)
KeywordsTRANSFERASE / Ferridoxin fold / alpha-beta protein family / Nucleoside diphosphate kinases (NDKs) catalyze the transfer of a gamma phosphate from nucleoside triphosphates to nucleoside diphosphate / Nucleotide binding / Metal binding / Phosphorylation / Kinase / Nucleotide metabolism / Nucleoside diphosphate kinases (NDKs) / transfer / a gamma phosphate / nucleoside triphosphates / nucleoside diphosphate / Nucleotide binding Magnesium / Magnesium / gamma phosphate

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