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Structure paper

TitleMolecular adaptability of nucleoside diphosphate kinase b from trypanosomatid parasites: stability, oligomerization and structural determinants of nucleotide binding.
Journal, issue, pagesMol Biosyst, Vol. 7, Page 2189-2195, Year 2011
Publish dateJun 13, 2010 (structure data deposition date)
AuthorsSouza, T.A. / Trindade, D.M. / Tonoli, C.C. / Santos, C.R. / Ward, R.J. / Arni, R.K. / Oliveira, A.H. / Murakami, M.T.
External linksMol Biosyst / PubMed:21528129
MethodsX-ray diffraction
Resolution1.8 - 2.95 Å
Structure data

PDB-3ngr:
Crystal structure of Leishmania nucleoside diphosphate kinase b with unordered nucleotide-binding loop.
Method: X-RAY DIFFRACTION / Resolution: 2.95 Å

PDB-3ngs:
Structure of Leishmania nucleoside diphosphate kinase b with ordered nucleotide-binding loop
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

PDB-3ngt:
Structure of Leishmania NDKb complexed with AMP.
Method: X-RAY DIFFRACTION / Resolution: 2.57 Å

PDB-3ngu:
Structure of Leishmania NDKb complexed with ADP.
Method: X-RAY DIFFRACTION / Resolution: 2.29 Å

PDB-3prv:
Nucleoside diphosphate kinase B from Trypanosoma cruzi
Method: X-RAY DIFFRACTION / Resolution: 2.69 Å

Chemicals

ChemComp-PO4:
PHOSPHATE ION

ChemComp-HOH:
WATER

ChemComp-DTT:
2,3-DIHYDROXY-1,4-DITHIOBUTANE

ChemComp-AMP:
ADENOSINE MONOPHOSPHATE / AMP*YM

ChemComp-ADP:
ADENOSINE-5'-DIPHOSPHATE / ADP, energy-carrying molecule*YM

Source
  • leishmania major (eukaryote)
  • trypanosoma cruzi (eukaryote)
KeywordsTRANSFERASE / NDKb / phosphate ion / LmNDKb / ordered nucleotide-binding loop / AMP / ADP / nucleoside diphosphate kinase b / trypanosomatids / alpha-beta-alpha fold / secreted

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