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Structure paper

TitleStructure of prokaryotic polyamine deacetylase reveals evolutionary functional relationships with eukaryotic histone deacetylases .
Journal, issue, pagesBiochemistry, Vol. 50, Page 1808-1817, Year 2011
Publish dateJan 7, 2011 (structure data deposition date)
AuthorsLombardi, P.M. / Angell, H.D. / Whittington, D.A. / Flynn, E.F. / Rajashankar, K.R. / Christianson, D.W.
External linksBiochemistry / PubMed:21268586
MethodsX-ray diffraction
Resolution2.25 - 2.5 Å
Structure data

PDB-3q9b:
Crystal Structure of APAH complexed with M344
Method: X-RAY DIFFRACTION / Resolution: 2.25 Å

PDB-3q9c:
Crystal Structure of H159A APAH complexed with N8-acetylspermidine
Method: X-RAY DIFFRACTION / Resolution: 2.3 Å

PDB-3q9e:
Crystal structure of H159A APAH complexed with acetylspermine
Method: X-RAY DIFFRACTION / Resolution: 2.5 Å

PDB-3q9f:
Crystal Structure of APAH complexed with CAPS
Method: X-RAY DIFFRACTION / Resolution: 2.35 Å

Chemicals

ChemComp-DMS:
DIMETHYL SULFOXIDE / DMSO, precipitant*YM

ChemComp-B3N:
4-(dimethylamino)-N-[7-(hydroxyamino)-7-oxoheptyl]benzamide

ChemComp-K:
Unknown entry

ChemComp-NA:
Unknown entry

ChemComp-ZN:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-Q9C:
N-{4-[(3-aminopropyl)amino]butyl}acetamide

ChemComp-SP5:
N-[3-({4-[(3-aminopropyl)amino]butyl}amino)propyl]acetamide

ChemComp-CXS:
3-CYCLOHEXYL-1-PROPYLSULFONIC ACID / pH buffer*YM

ChemComp-PO4:
PHOSPHATE ION

Source
  • mycoplana ramosa (bacteria)
KeywordsHYDROLASE/HYDROLASE INHIBITOR / HDAC / polyamines / Arginase Fold / Deacetylase / HYDROLASE-HYDROLASE INHIBITOR complex / HYDROLASE / polyamine

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