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Structure paper

TitleSpecific Structural Features of the N-Acetylmuramoyl-L-Alanine Amidase Amid from Escherichia Coli and Mechanistic Implications for Enzymes of This Family.
Journal, issue, pagesJ. Mol. Biol., Vol. 397, Page 249-, Year 2010
Publish dateJan 7, 2005 (structure data deposition date)
AuthorsKerff, F. / Petrella, S. / Mercier, F. / Sauvage, E. / Herman, R. / Pennartz, A. / Zervosen, A. / Luxen, A. / Frere, J.M. / Joris, B. / Charlier, P.
External linksJ. Mol. Biol. / PubMed:20036252
MethodsX-ray diffraction
Resolution1.75 - 2.8 Å
Structure data

PDB-2bh7:
Crystal structure of a SeMet derivative of AmiD at 2.2 angstroms
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

PDB-2wkx:
Crystal structure of the native E. coli zinc amidase AmiD
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

PDB-3d2y:
Complex of the N-acetylmuramyl-L-alanine amidase AmiD from E.coli with the substrate anhydro-N-acetylmuramic acid-L-Ala-D-gamma-Glu-L-Lys
Method: X-RAY DIFFRACTION / Resolution: 1.75 Å

PDB-3d2z:
Complex of the N-acetylmuramyl-L-alanine amidase AmiD from E.coli with the product L-Ala-D-gamma-Glu-L-Lys
Method: X-RAY DIFFRACTION / Resolution: 2.8 Å

Chemicals

ChemComp-ZN:
Unknown entry

ChemComp-SO4:
SULFATE ION

ChemComp-HOH:
WATER

ChemComp-CL:
Unknown entry

ChemComp-GOL:
GLYCEROL

Source
  • escherichia coli (E. coli)
  • escherichia coli str. k12 substr. mg1655 (bacteria)
KeywordsHYDROLASE / ZINC AMIDASE / PGRP / T7 LYSOZYME / AMPD / OUTER MEMBRANE / CELL WALL BIOGENESIS/DEGRADATION / CELL MEMBRANE / METAL-BINDING / Peptidoglycan Recognizing Protein / N-ACETYLMURAMYL-L-ALANINE AMIDASE / Lipoprotein / Membrane / Palmitate

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