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TitleCrystal structures of YkuI and its complex with second messenger cyclic Di-GMP suggest catalytic mechanism of phosphodiester bond cleavage by EAL domains.
Journal, issue, pagesJ. Biol. Chem., Vol. 284, Page 13174-13184, Year 2009
Publish dateOct 14, 2005 (structure data deposition date)
AuthorsMinasov, G. / Padavattan, S. / Shuvalova, L. / Brunzelle, J.S. / Miller, D.J. / Basle, A. / Massa, C. / Collart, F.R. / Schirmer, T. / Anderson, W.F.
External linksJ. Biol. Chem. / PubMed:19244251
MethodsX-ray diffraction
Resolution2.61 - 2.8 Å
Structure data

PDB-2bas:
Crystal Structure of the Bacillus subtilis YkuI Protein, with an EAL Domain.
Method: X-RAY DIFFRACTION / Resolution: 2.61 Å

PDB-2w27:
CRYSTAL STRUCTURE OF THE BACILLUS SUBTILIS YKUI PROTEIN, WITH AN EAL DOMAIN, IN COMPLEX WITH SUBSTRATE C-DI-GMP AND CALCIUM
Method: X-RAY DIFFRACTION / Resolution: 2.8 Å

Chemicals

ChemComp-BME:
BETA-MERCAPTOETHANOL

ChemComp-HOH:
WATER

ChemComp-5GP:
GUANOSINE-5'-MONOPHOSPHATE

ChemComp-CA:
Unknown entry

Source
  • bacillus subtilis (bacteria)
KeywordsSIGNALING PROTEIN / YkuI protein / EAL domain / Structural Genomics / PSI / Protein Structure Initiative / Midwest Center for Structural Genomics / MCSG / CYCLIC DI-GMP

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