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Structure paper

TitleStructure of a small-molecule inhibitor of a DNA polymerase sliding clamp.
Journal, issue, pagesProc. Natl. Acad. Sci. Usa, Vol. 105, Page 11116-11121, Year 2008
Publish dateMay 5, 2008 (structure data deposition date)
AuthorsGeorgescu, R.E. / Yurieva, O. / Kim, S.S. / Kuriyan, J. / Kong, X.P. / O'Donnell, M.
External linksProc. Natl. Acad. Sci. Usa / PubMed:18678908
MethodsX-ray diffraction
Resolution1.64 - 2 Å
Structure data

PDB-3d1e:
Crystal structure of E. coli sliding clamp (beta) bound to a polymerase II peptide
Method: X-RAY DIFFRACTION / Resolution: 1.9 Å

PDB-3d1f:
Crystal structure of E. coli sliding clamp (beta) bound to a polymerase III peptide
Method: X-RAY DIFFRACTION / Resolution: 2 Å

PDB-3d1g:
Structure of a small molecule inhibitor bound to a DNA sliding clamp
Method: X-RAY DIFFRACTION / Resolution: 1.64 Å

Chemicals

ChemComp-HOH:
WATER

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER

ChemComp-323:
2-[3,6-bis(dimethylamino)xanthen-9-yl]-5-methanoyl-benzoate

ChemComp-322:
[(5R)-5-(2,3-dibromo-5-ethoxy-4-hydroxybenzyl)-4-oxo-2-thioxo-1,3-thiazolidin-3-yl]acetic acid

Source
  • escherichia coli (E. coli)
KeywordsTRANSFERASE / TRANSCRIPTION / chemical probe / DNA polymerase / DNA sliding clamp / DNA replication / rational drug design / antibiotic target

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