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Structure paper

TitleCrystal Structures of Complexes of Bacterial Dd-Peptidases with Peptidoglycan-Mimetic Ligands: The Substrate Specificity Puzzle.
Journal, issue, pagesJ. Mol. Biol., Vol. 381, Page 383-, Year 2008
Publish dateNov 14, 2007 (structure data deposition date)
AuthorsSauvage, E. / Powell, A.J. / Heilemann, J. / Josephin, H.R. / Charlier, P. / Davies, C. / Pratt, R.F.
External linksJ. Mol. Biol. / PubMed:18602645
MethodsX-ray diffraction
Resolution1.6 - 2.4 Å
Structure data

PDB-2vgj:
Crystal structure of Actinomadura R39 DD-peptidase complexed with a peptidoglycan-mimetic cephalosporin
Method: X-RAY DIFFRACTION / Resolution: 2.4 Å

PDB-2vgk:
Crystal structure of Actinomadura R39 DD-peptidase complexed with a peptidoglycan-mimetic cephalosporin
Method: X-RAY DIFFRACTION / Resolution: 2.25 Å

PDB-3beb:
Crystal structure of E. coli penicillin-binding protein 5 in complex with a peptide-mimetic penicillin
Method: X-RAY DIFFRACTION / Resolution: 2 Å

PDB-3bec:
Crystal structure of E. coli penicillin-binding protein 5 in complex with a peptide-mimetic cephalosporin
Method: X-RAY DIFFRACTION / Resolution: 1.6 Å

Chemicals

ChemComp-REC:
CEPHALOSPORIN / antibiotic*YM

ChemComp-SO4:
SULFATE ION

ChemComp-MG:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-REZ:
(2R)-2-AMINO-7-{[(1R)-1-CARBOXYETHYL]AMINO}-7-OXOHEPTANOIC ACID

ChemComp-HJ3:
(2R,4S)-2-[(1R)-1-{[(6S)-6-amino-6-carboxyhexanoyl]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid

ChemComp-GOL:
GLYCEROL

ChemComp-HJ2:
(2R)-2-[(R)-{[(6S)-6-amino-6-carboxyhexanoyl]amino}(carboxy)methyl]-5-methyl-3,6-dihydro-2H-1,3-thiazine-4-carboxylic acid

Source
  • actinomadura sp. (bacteria)
  • escherichia coli (E. coli)
KeywordsHYDROLASE / CELL WALL BIOGENESIS/DEGRADATION / ANTIBIOTIC RESISTANCE / PEPTIDOGLYCAN SYNTHESIS / PROTEASE / SECRETED / CELL SHAPE / CARBOXYPEPTIDASE / PENICILLIN-BINDING / ACTINOMADURA / PEPTIDOGLYCAN / TRANSPEPTIDASE / PENICILLIN-BINDING PROTEIN / DD-CARBOXYPEPTIDASE / DESIGNED PENICILLIN / Inner membrane / Membrane / DESIGNED CEPHALOSPORIN

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