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Title3.88 A structure of cytoplasmic polyhedrosis virus by cryo-electron microscopy.
Journal, issue, pagesNature, Vol. 453, Issue 7193, Page 415-419, Year 2008
Publish dateMay 15, 2008
AuthorsXuekui Yu / Lei Jin / Z Hong Zhou /
PubMed AbstractCytoplasmic polyhedrosis virus (CPV) is unique within the Reoviridae family in having a turreted single-layer capsid contained within polyhedrin inclusion bodies, yet being fully capable of cell ...Cytoplasmic polyhedrosis virus (CPV) is unique within the Reoviridae family in having a turreted single-layer capsid contained within polyhedrin inclusion bodies, yet being fully capable of cell entry and endogenous RNA transcription. Biochemical data have shown that the amino-terminal 79 residues of the CPV turret protein (TP) is sufficient to bring CPV or engineered proteins into the polyhedrin matrix for micro-encapsulation. Here we report the three-dimensional structure of CPV at 3.88 A resolution using single-particle cryo-electron microscopy. Our map clearly shows the turns and deep grooves of alpha-helices, the strand separation in beta-sheets, and densities for loops and many bulky side chains; thus permitting atomic model-building effort from cryo-electron microscopy maps. We observed a helix-to-beta-hairpin conformational change between the two conformational states of the capsid shell protein in the region directly interacting with genomic RNA. We have also discovered a messenger RNA release hole coupled with the mRNA capping machinery unique to CPV. Furthermore, we have identified the polyhedrin-binding domain, a structure that has potential in nanobiotechnology applications.
External linksNature / PubMed:18449192 / PubMed Central
MethodsEM (single particle)
Resolution3.88 Å
Structure data

EMDB-1508: 3.88 Angstrom structure of cytoplasmic polyhedrosis virus by single-particle cryo-electron microscopy
PDB-3cnf: 3.88 Angstrom structure of cytoplasmic polyhedrosis virus by cryo-electron microscopy
Method: EM (single particle) / Resolution: 3.88 Å

Source
  • bombyx mori cypovirus 1
KeywordsVIRUS / cytoplasmic polyhedrosis virus / capsid protein / turret protein / polyhedrin-binding domain / guanylyltransferase domain / icosahedral virus

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