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Structure paper

TitleInsights into the mechanism of progressive RNA degradation by the archaeal exosome.
Journal, issue, pagesJ. Biol. Chem., Vol. 283, Page 14120-14131, Year 2008
Publish dateApr 25, 2007 (structure data deposition date)
AuthorsNavarro, M.V.A.S. / Oliveira, C.C. / Zanchin, N.I. / Guimaraes, B.G.
External linksJ. Biol. Chem. / PubMed:18353775
MethodsX-ray diffraction
Resolution1.94 - 2.41 Å
Structure data

PDB-2pnz:
Crystal structure of the P. abyssi exosome RNase PH ring complexed with UDP and GMP
Method: X-RAY DIFFRACTION / Resolution: 2.14 Å

PDB-2po0:
Crystal structure of the P. abyssi exosome RNase PH ring complexed with ADP in double conformation
Method: X-RAY DIFFRACTION / Resolution: 2.3 Å

PDB-2po1:
Crystal structure of the P. abyssi exosome RNase PH ring complexed with a single stranded 10-mer poly(A) RNA
Method: X-RAY DIFFRACTION / Resolution: 1.94 Å

PDB-2po2:
Crystal structure of the P. abyssi exosome RNase PH ring complexed with CDP
Method: X-RAY DIFFRACTION / Resolution: 2.41 Å

Chemicals

ChemComp-UDP:
URIDINE-5'-DIPHOSPHATE / UDP*YM

ChemComp-5GP:
GUANOSINE-5'-MONOPHOSPHATE

ChemComp-MPD:
(4S)-2-METHYL-2,4-PENTANEDIOL / precipitant*YM

ChemComp-HOH:
WATER

ChemComp-ADP:
ADENOSINE-5'-DIPHOSPHATE / ADP, energy-carrying molecule*YM

ChemComp-CDP:
CYTIDINE-5'-DIPHOSPHATE

Source
  • pyrococcus abyssi (archaea)
Keywordshydrolase/hydrolase / RNase PH / hydrolase-hydrolase COMPLEX / hydrolase/hydrolase/RNA / hydrolase-hydrolase-RNA COMPLEX

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