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Structure paper

TitleThe Crystal Structure of the Bifunctional Deaminase/Reductase RibD of the Riboflavin Biosynthetic Pathway in Escherichia coli: Implications for the Reductive Mechanism.
Journal, issue, pagesJ. Mol. Biol., Vol. 373, Page 48-64, Year 2007
Publish dateFeb 25, 2006 (structure data deposition date)
AuthorsStenmark, P. / Moche, M. / Gurmu, D. / Nordlund, P.
External linksJ. Mol. Biol. / PubMed:17765262
MethodsX-ray diffraction
Resolution2.6 - 3 Å
Structure data

PDB-2g6v:
The crystal structure of ribD from Escherichia coli
Method: X-RAY DIFFRACTION / Resolution: 2.6 Å

PDB-2o7p:
The crystal structure of RibD from Escherichia coli in complex with the oxidised NADP+ cofactor in the active site of the reductase domain
Method: X-RAY DIFFRACTION / Resolution: 3 Å

PDB-2obc:
The crystal structure of RibD from Escherichia coli in complex with a substrate analogue, ribose 5-phosphate (beta form), bound to the active site of the reductase domain
Method: X-RAY DIFFRACTION / Resolution: 3 Å

Chemicals

ChemComp-HOH:
WATER

ChemComp-NAP:
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE

ChemComp-RP5:
5-O-phosphono-beta-D-ribofuranose

Source
  • escherichia coli (E. coli)
  • escherichia coli k12 (bacteria)
KeywordsHYDROLASE / OXIDOREDUCTASE / ribD apo structure / Structural Genomics / Structural Proteomics in Europe / SPINE / NADP+ complex / alpha and beta class with mainly parallell beta strands / HTP-protein Escherichia coli / alpha and beta class of proteins with mainly parallell strands / Substrate analogue complex (ribose 5-phosphate / beta-form) / HTP Escherichia coli proteins

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