[English] 日本語
EMN Papers
- Database of articles cited by 3DEM data entries -

+
Search query

Keywords
Author
Journal
IF

-
Structure paper

TitleCryo-EM and X-ray structures of TRPV4 reveal insight into ion permeation and gating mechanisms.
Journal, issue, pagesNat Struct Mol Biol, Vol. 25, Issue 3, Page 252-260, Year 2018
Publish dateFeb 26, 2018
AuthorsZengqin Deng / Navid Paknejad / Grigory Maksaev / Monica Sala-Rabanal / Colin G Nichols / Richard K Hite / Peng Yuan /
PubMed AbstractThe transient receptor potential (TRP) channel TRPV4 participates in multiple biological processes, and numerous TRPV4 mutations underlie several distinct and devastating diseases. Here we present ...The transient receptor potential (TRP) channel TRPV4 participates in multiple biological processes, and numerous TRPV4 mutations underlie several distinct and devastating diseases. Here we present the cryo-EM structure of Xenopus tropicalis TRPV4 at 3.8-Å resolution. The ion-conduction pore contains an intracellular gate formed by the inner helices, but lacks any extracellular gate in the selectivity filter, as observed in other TRPV channels. Anomalous X-ray diffraction analyses identify a single ion-binding site in the selectivity filter, thus explaining TRPV4 nonselectivity. Structural comparisons with other TRP channels and distantly related voltage-gated cation channels reveal an unprecedented, unique packing interface between the voltage-sensor-like domain and the pore domain, suggesting distinct gating mechanisms. Moreover, our structure begins to provide mechanistic insights to the large set of pathogenic mutations, offering potential opportunities for drug development.
External linksNat Struct Mol Biol / PubMed:29483651 / PubMed Central
MethodsEM (single particle) / X-ray diffraction
Resolution3.8 - 6.5 Å
Structure data

EMDB-7075, PDB-6bbj:
Xenopus Tropicalis TRPV4
Method: EM (single particle) / Resolution: 3.8 Å

PDB-6c8f:
Crystal structure of Transient Receptor Potential (TRP) channel TRPV4 in the presence of cesium
Method: X-RAY DIFFRACTION / Resolution: 6.5 Å

PDB-6c8g:
Crystal structure of Transient Receptor Potential (TRP) channel TRPV4 in the presence of barium
Method: X-RAY DIFFRACTION / Resolution: 6.31 Å

PDB-6c8h:
Crystal structure of Transient Receptor Potential (TRP) channel TRPV4 in the presence of gadolinium
Method: X-RAY DIFFRACTION / Resolution: 6.5 Å

Chemicals

ChemComp-CS:
Unknown entry

ChemComp-BA:
Unknown entry

ChemComp-GD:
GADOLINIUM ATOM

Source
  • xenopus tropicalis (tropical clawed frog)
KeywordsMETAL TRANSPORT / Ion Channel / TRP channel / TRANSPORT PROTEIN / ion channal

+
About EMN Papers

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Papers

Database of articles cited by 3DEM data entries

  • Database of articles cited by 3DEM data entries in EMDB and PDB
  • Using PubMed data

Related info.:EMDB / PDB / Q: What are the data sources of EM Navigator? / EM Navigator / Yorodumi Papers / Changes in new EM Navigator and Yorodumi

Read more