[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database
Q: What is the data source of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 38 items for (Category: virus-e,virus-o,virus-c) & (Data entries: Latest only)

EMDB-23165:
Cryo-EM structure of the SARS-CoV-2 spike glycoprotein bound to Fab 2-43

EMDB-23166:
Cryo-EM structure of the SARS-CoV-2 spike glycoprotein bound to Fab 2-15

EMDB-23167:
Cryo-EM structure of the SARS-CoV-2 spike glycoprotein bound to Fab H4

PDB-7l56:
Cryo-EM structure of the SARS-CoV-2 spike glycoprotein bound to Fab 2-43

PDB-7l57:
Cryo-EM structure of the SARS-CoV-2 spike glycoprotein bound to Fab 2-15

PDB-7l58:
Cryo-EM structure of the SARS-CoV-2 spike glycoprotein bound to Fab H4

EMDB-23151:
Cryo-EM map of NTD-directed neutralizing antibody 2-51 in complex with prefusion SARS-CoV-2 spike glycoprotein

EMDB-23462:
Structure of CD4 mimetic BNM-III-170 in complex with BG505 SOSIP.664 HIV-1 Env trimer and 17b Fab

EMDB-23465:
Structure of CD4 mimetic M48U1 in complex with BG505 SOSIP.664 HIV-1 Env trimer and 17b Fab

PDB-7lo6:
Structure of CD4 mimetic BNM-III-170 in complex with BG505 SOSIP.664 HIV-1 Env trimer and 17b Fab

PDB-7lok:
Structure of CD4 mimetic M48U1 in complex with BG505 SOSIP.664 HIV-1 Env trimer and 17b Fab

EMDB-23577:
SARS-CoV-2 S/S2M11/S2X333 Local Refinement

EMDB-23578:
SARS-CoV-2 S/S2M11/S2L28 Local Refinement

EMDB-23579:
SARS-CoV-2 S/S2M11/S2X333 Global Refinement

EMDB-23580:
SARS-CoV-2 S/S2M11/S2L28 Global Refinement

EMDB-23581:
SARS-CoV-2 S/S2M11/S2M28 Local Refinement

EMDB-23582:
SARS-CoV-2 S/S2M11/S2M28 Global Refinement

EMDB-23583:
SARS-CoV-2 S/S2M11/S2M24 map

EMDB-23584:
SARS-CoV-2 S/S2X28 map

EMDB-23585:
SARS-CoV-2 S/S2M11/S2X316 map

EMDB-23586:
SARS-CoV-2 S/S2M11/S2L20 map

PDB-7lxw:
SARS-CoV-2 S/S2M11/S2X333 Local Refinement

PDB-7lxx:
SARS-CoV-2 S/S2M11/S2L28 Local Refinement

PDB-7lxy:
SARS-CoV-2 S/S2M11/S2X333 Global Refinement

PDB-7lxz:
SARS-CoV-2 S/S2M11/S2L28 Global Refinement

PDB-7ly0:
SARS-CoV-2 S/S2M11/S2M28 Local Refinement

PDB-7ly2:
SARS-CoV-2 S/S2M11/S2M28 Global Refinement

EMDB-30558:
FOOT AND MOUTH DISEASE VIRUS O/TIBET/99-BOUND THE SINGLE CHAIN FRAGMEN ANTIBODY B77

EMDB-30559:
FOOT AND MOUTH DISEASE VIRUS O/TIBET/99-BOUND THE SINGLE CHAIN FRAGMEN ANTIBODY F145

EMDB-30560:
FOOT AND MOUTH DISEASE VIRUS O/TIBET/99-BOUND THE SINGLE CHAIN FRAGMEN ANTIBODY R50

EMDB-30565:
FOOT AND MOUTH DISEASE VIRUS A/WH/CHA/09-BOUND THE SINGLE CHAIN FRAGME ANTIBODY R50

PDB-7d3k:
FOOT AND MOUTH DISEASE VIRUS O/TIBET/99-BOUND THE SINGLE CHAIN FRAGMEN ANTIBODY B77

PDB-7d3l:
FOOT AND MOUTH DISEASE VIRUS O/TIBET/99-BOUND THE SINGLE CHAIN FRAGMEN ANTIBODY F145

PDB-7d3m:
FOOT AND MOUTH DISEASE VIRUS O/TIBET/99-BOUND THE SINGLE CHAIN FRAGMEN ANTIBODY R50

PDB-7d3r:
FOOT AND MOUTH DISEASE VIRUS A/WH/CHA/09-BOUND THE SINGLE CHAIN FRAGME ANTIBODY R50

EMDB-12194:
The cryo-EM structure of vesivirus 2117, an adventitious agent and possible cause of haemorrhagic gastroenteritis in dogs.

PDB-7bjp:
The cryo-EM structure of vesivirus 2117, an adventitious agent and possible cause of haemorrhagic gastroenteritis in dogs.

PDB-7l6o:
Cryo-EM structure of HIV-1 Env CH848.3.D0949.10.17chim.6R.DS.SOSIP.664

+
About EMN search

-
News

-
Aug 12, 2020. New: Covid-19 info

New: Covid-19 info

  • New page: Covid-19 featured information page in EM Navigator

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

-
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. New: Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

  • Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.
    PageDataFormat
    EMN Searchsearch resultCSV, TSV, or JSON
    EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

+
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)

EMDB accession codes are about to change! (news from PDBe EMDB page)

  • The allocation of 4 digits for EMDB accession codes will soon come to an end. Whilst these codes will remain in use, new EMDB accession codes will include an additional digit and will expand incrementally as the available range of codes is exhausted. The current 4-digit format prefixed with “EMD-” (i.e. EMD-XXXX) will advance to a 5-digit format (i.e. EMD-XXXXX), and so on. It is currently estimated that the 4-digit codes will be depleted around Spring 2019, at which point the 5-digit format will come into force. (see PDBe EMDB page)
  • The EM Navigator/Yorodumi systems omit the EMD- prefix.

Related info.:Q: What is "EMD"? / ID/Accession-code notation in Yorodumi/EM Navigator

External links:EMDB at PDBe / Contact to PDBj

+
Feb 20, 2018. PDBj/BINDS workshop in Osaka University

PDBj/BINDS workshop in Osaka University

    Read more

    -
    EMN Search

    3DEM data search

    • Advanced data search for EMDB and EM data in PDB widh various search and display options

    Related info.:EMDB / PDB / EM Navigator / Q: What is the data source of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

    Read more